Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0120
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               29   3.3  
SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_2024| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-14)           28   7.7  

>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 327 LGFGYVQAITTKGHRQSAAKVFLHRQKKRQNLHILPDTYVTKI 199
           LGF Y   + TK   Q    + L+R   + +LH++ DT  T++
Sbjct: 153 LGFYYKDVLETKVTAQLKDAIVLYRDPTKGDLHLIIDTVQTEL 195


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 96  PIASPQLLMLSGVGPKKHLNSMGIPVLKDLPV 1
           P     ++  SGVGP  HLN    PV ++ PV
Sbjct: 26  PSVDHSVIQPSGVGPAIHLNGSATPVQENQPV 57


>SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = -1

Query: 637  FAENTSKSNQYIF 599
            FAEN+SKSNQY++
Sbjct: 1009 FAENSSKSNQYVY 1021


>SB_2024| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-14)
          Length = 214

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 231 HILPDTYVTKILIDART-KTAYGVEYVRNRLKHIVLARK 118
           +++P+ +VT +   AR    + G + V+N LKHI  ARK
Sbjct: 87  YVIPEVWVTYLETGARRIGNSDGGQSVKNILKHITPARK 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,678
Number of Sequences: 59808
Number of extensions: 427211
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)