Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0117
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0354 - 2550061-2551033,2551125-2551385,2553079-2553274,255...    28   7.5  
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    28   7.5  
10_08_0982 - 22025279-22027277,22030256-22030488,22031205-220313...    28   9.9  

>06_01_0354 -
           2550061-2551033,2551125-2551385,2553079-2553274,
           2553443-2553632,2553750-2553983
          Length = 617

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 303 KGINKYFIQYTLFILFITWVNELTALLVYRE 395
           KG  KY   +++ + F  W N  TALL +RE
Sbjct: 285 KGSVKYNSSWSMIVNFPLWFNFATALLFHRE 315


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -2

Query: 794 LSSIGSYLS*ASTAKNRPRKTNSSFILKFSTRFPSTSV*QSYLPLFL 654
           +SSI SY S  ST++NR  K N S +L  ST +    +   Y+ LFL
Sbjct: 187 MSSILSYQSNNSTSQNRGLK-NFSLLLSLSTLYAPLLI-LKYMDLFL 231


>10_08_0982 -
           22025279-22027277,22030256-22030488,22031205-22031344,
           22032783-22032957
          Length = 848

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 674 SYLPLFLPPPGRFSPHHRI 618
           S LPL  PPP    PHH I
Sbjct: 14  SLLPLSTPPPTAVGPHHEI 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,815,702
Number of Sequences: 37544
Number of extensions: 353568
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)