Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0117
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74490.1 68414.m08629 protein kinase, putative similar to pro...    30   2.0  
At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-containi...    29   4.7  

>At1g74490.1 68414.m08629 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695; contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 399

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 503 TAYFCPESVLSSGFKGGISTSCCKVGDGVHFVTSI 399
           T  FCPES++  G  G +   C   G G+    ++
Sbjct: 88  TGNFCPESLIGEGGFGFVHKGCINGGPGIELAVAV 122


>At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 552

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 476 LSSGFKGGISTSCCKVGDGVHFVTSIGFSIHQKG--RKLVY 360
           + SG  G +  SCC+V +  H    +  +IH+ G  R+ VY
Sbjct: 475 IDSGILGAL-LSCCEVHENTHLAEVVAENIHKNGEERRSVY 514


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,779,060
Number of Sequences: 28952
Number of extensions: 299716
Number of successful extensions: 600
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)