Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0116
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)               61   1e-09
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.012
SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  

>SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)
          Length = 103

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 32/74 (43%), Positives = 42/74 (56%)
 Frame = +1

Query: 118 ESQTEKLARKSKESPFMVIGITGLXXXXXXXXXXXXXXXXMSTSVFLMQFRVIAQGTVVG 297
           E++TEKL RKSK  PF+ IGI G                 MSTS ++M+ RVIAQ  VVG
Sbjct: 21  ETETEKLIRKSKAQPFIPIGILGTTAAIVWGVIAYRHRGPMSTSRYIMRLRVIAQSCVVG 80

Query: 298 ALTAGMMYTLYKNH 339
           ++  GM  T Y+ +
Sbjct: 81  SIMVGMGITAYQGN 94


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = +1

Query: 115  EESQTEKLARKSKESPFMVIGITGLXXXXXXXXXXXXXXXXMSTSVFLMQFRVIAQGTVV 294
            +E+  EK ARK KE+PF+ IG   L                +     +M+ RV+AQG+ +
Sbjct: 3091 DETTKEKFARKVKENPFVPIG-CALTVSALVYGLLSFKRGDVGMQQTMMRARVVAQGSTI 3149

Query: 295  GALTAGMMYT 324
             AL  G   T
Sbjct: 3150 VALVGGCFAT 3159



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +1

Query: 256  LMQFRVIAQGTVVGALTAGMMYTLYKNHFNK 348
            +M+ RV+AQG+ + A+  G+ YT+ K+H NK
Sbjct: 3181 MMRARVLAQGSTLIAVIGGLGYTMLKDHANK 3211


>SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 241 STSVFLMQFRVIAQGTVVGALTAGMMYTLYKN 336
           S S+++M  RV   G ++GA+  G++YT Y++
Sbjct: 190 SNSMYVMSVRVTL-GALIGAVLCGLIYTCYRD 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,730,589
Number of Sequences: 59808
Number of extensions: 369593
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)