Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0115
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.38 
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   3.5  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   4.7  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   6.1  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 43   FNN*NYSYGLIPSFCHFHCHYTSMYLYYLRLLEFFIFRGRGRLRNCVSILKYW 201
            F N NY Y +   F H+H  Y S +L YL  +E+FI       +N      YW
Sbjct: 1466 FVNLNYLYSIWSIFVHWHRAYYS-HLDYLTEVEYFIMGNPN--QNACGEESYW 1515


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 64  YGLIPSFCHFHCHYTSMYLYYL----RLLEFFIF 153
           Y L+  FC    HY   + +YL    R ++ FIF
Sbjct: 344 YPLVLIFCKLFIHYNERFFHYLIDTDRAIDLFIF 377


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 603 FIILPKTAQVHLLLPGFMNKAYLTKL*HHASYRNIILFKLFLTCFW-SPFTSLVKCLLVS 427
           FI+L +T +  +++   M+    T +    +  +  L + F+   W   FT+L  CL + 
Sbjct: 12  FIVLRETLEASIIVSVLMSFISQTLMDKDGNVTDPKLKRKFMLQVWIGSFTALFICLAIG 71

Query: 426 GNRIHGFTLL 397
           G  I  F  L
Sbjct: 72  GGFIGAFYAL 81


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = -2

Query: 133 AGGNTSTYSYNDNENDKNSGSSHKSSFN 50
           + GN++  +YN+N N++N G+++  ++N
Sbjct: 604 SSGNSNKQNYNNN-NNQNYGNNNNQNYN 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,632
Number of Sequences: 5004
Number of extensions: 53810
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)