Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0115
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       30   1.4  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    30   1.4  
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    30   1.4  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    30   1.4  
Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical ...    28   7.6  

>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 540  YLTKL*HHASYRNIILFKLFLTCFWSPFTSLVK 442
            +L  L HH  Y N+ LF  FL   W PF +L++
Sbjct: 970  HLFSLDHHQIYTNLALFAGFLAA-WDPFCALLR 1001


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
            protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 540  YLTKL*HHASYRNIILFKLFLTCFWSPFTSLVK 442
            +L  L HH  Y N+ LF  FL   W PF +L++
Sbjct: 970  HLFSLDHHQIYTNLALFAGFLAA-WDPFCALLR 1001


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform b
            protein.
          Length = 1147

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 540  YLTKL*HHASYRNIILFKLFLTCFWSPFTSLVK 442
            +L  L HH  Y N+ LF  FL   W PF +L++
Sbjct: 970  HLFSLDHHQIYTNLALFAGFLAA-WDPFCALLR 1001


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform a
            protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 540  YLTKL*HHASYRNIILFKLFLTCFWSPFTSLVK 442
            +L  L HH  Y N+ LF  FL   W PF +L++
Sbjct: 970  HLFSLDHHQIYTNLALFAGFLAA-WDPFCALLR 1001


>Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical
           protein F38B7.3 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 121 TSTYSYNDNENDKNSGSSHKSSFN 50
           T+ Y YN  +ND N G++H SS N
Sbjct: 301 TNNY-YNYGDNDNNGGNNHSSSSN 323


>AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical
           protein C52E2.5 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -3

Query: 669 KSYCKMKYTLKISDNRRMNLEGFIILPKTAQVHLLLPGFMNKAYLTKL*HHASYRNIILF 490
           +S+CK  Y  KISD   +++E   +L        +L    N+  + K+  H  +  +++ 
Sbjct: 277 ESFCKSIYIYKISDKNDVSMETSKVLTSLPSKSAML-CLSNRLIMEKIVRHFDFAELVVL 335

Query: 489 K 487
           +
Sbjct: 336 R 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,506,216
Number of Sequences: 27780
Number of extensions: 285213
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)