Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0114
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    29   0.58 
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    28   1.4  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   2.4  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    26   7.2  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   9.5  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   9.5  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.5  

>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 360 YTIIICALVIYT--PS*KQYETTYSVIFYVLYFCLYNFGNIINNMPHYVRN 214
           +T   C L +++  PS   + T Y+   YVL  C Y   +  N   ++ RN
Sbjct: 288 FTYSHCTLYLFSHDPSVYNWSTQYTTGIYVLLLCCYYIFDTCNGQKNHFRN 338


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = +3

Query: 243 LYCRNCINKNIAHKI*RNKSFHIASNLGCR*QVHRLLLYNSIFTLVIMYCSRVFLGMVKR 422
           L C   I   + + +     F   +NL CR   + +L +   F  +  Y S + + + K 
Sbjct: 103 LRCSYAIQAKLLNWLIHVYEFLDGNNLLCR--YYGVLFHFLDFLTLRPYISNLLVLLTKH 160

Query: 423 YSVMICLTNSLMLFYNGGGNRRATFLLAKL--FKTNCPILLI 542
           Y V     + L+  Y   GN    +LLA +  +K + P +++
Sbjct: 161 YHVKSFRIHQLLALYQKPGNTADPYLLALILTYKQHFPDVIV 202


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 393 SRVFLGMVKRYSVMICLTNSLMLFYNGGGNRRATFLLA 506
           S    G V      +  TNSLM   +GG NR A  +LA
Sbjct: 465 SNTLSGAVGSIQNYMTYTNSLMFIRSGGNNRLAGIMLA 502


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 354 IIICALVIYTPS*KQYETTYSVIFYVLYFCLYNFGNI 244
           ++IC    Y+     Y+T Y+++F+ +  CL +FG +
Sbjct: 139 VVICMNGCYSSF---YQTWYTLLFFYIPPCLLSFGGL 172


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 463 FTMEEETDVLRFYWLSFLKQTAQYSL 540
           F + E++D +RFY L+   +  +Y+L
Sbjct: 71  FDLTEKSDYMRFYRLNLFNKECRYNL 96


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 777 ALIITKKCHEKNIREIRKSFIEILTLHI 694
           AL + K C E +++ +   F+ ++ LH+
Sbjct: 323 ALAVEKNCIEGSLKYLENQFLSLIDLHL 350


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 710 ISINDFRISLMFFS*HFLVMINAIKIRKVT 799
           I  ND R+   FFS  F V+I AI +++ T
Sbjct: 642 IFANDIRVDRAFFSEAFSVIIAAIDLQEET 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,256
Number of Sequences: 5004
Number of extensions: 67433
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)