Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0114
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21265| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)              30   1.9  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   29   4.4  

>SB_21265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 325 PKLEAI*NDLFRYILCAI-FLFIQFRQYNK 239
           P L    NDLFR    AI FL++QF Q+NK
Sbjct: 39  PGLPKCQNDLFRNTYAAIRFLYLQFAQFNK 68


>SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)
          Length = 228

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 366 YCYTIIICALVI--YTPS*KQYETTYSVIFYVLYFCLYNFGNIINNMPHYVRN 214
           +CY + + ALVI  Y      YE    V+ Y+LY  +  F + +    H+  N
Sbjct: 120 FCYMLSVAALVIITYDKEVHWYEGMALVLMYLLYVTIMYFNSTLEGFFHWCFN 172


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = -3

Query: 218  ETIKIYRRLYR*DAYNYIFVSTRIDKIISILANFNSIHRQFH-----YRYKSKTL 69
            ET+KIYR LY+     Y  +    +K+   +A      +  H     YR+ SK L
Sbjct: 1548 ETLKIYRALYKHAMIRYAELRKTAEKVYQSIAEHRLTQKYIHHSKEYYRHSSKIL 1602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,120,044
Number of Sequences: 59808
Number of extensions: 457971
Number of successful extensions: 887
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)