Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0114
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    31   0.90 
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    31   0.90 
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    29   3.6  
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi...    28   8.3  
At1g16120.1 68414.m01932 wall-associated kinase, putative contai...    28   8.3  

>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 613 LSQVEHFA*RSIA*CCLVTLIPKVIYTNVQSQYLDKRFSYFSYVFLMTF 759
           LSQ+ H     +  CCL T +P ++Y ++ +  L KR  + S  + MT+
Sbjct: 432 LSQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRLHHDSDDYTMTW 480


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 613 LSQVEHFA*RSIA*CCLVTLIPKVIYTNVQSQYLDKRFSYFSYVFLMTF 759
           LSQ+ H     +  CCL T +P ++Y ++ +  L KR  + S  + MT+
Sbjct: 469 LSQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRLHHDSDDYTMTW 517


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -2

Query: 411 SLKTLDYNTL*LV*I-YCYTIIICALVIYTPS*KQYETTYSVIFYVLYFCLYNFGNII 241
           S KT +Y+ + +  + Y   +++  L IY+ + +++++ YS I   L  C+Y FG I+
Sbjct: 435 SNKTKEYDDIAIKFLSYVLLLLVIGLSIYSLAYERHKSWYSWILSSLTSCVYMFGFIM 492


>At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 444 TNSLMLFYNGGGNRRATFLLAKLFKTNCPILLIDYNVFLEL 566
           T+ +  F N G  R A  +  K+ +  C   LI YNV L +
Sbjct: 212 TSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNV 252


>At1g16120.1 68414.m01932 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 730

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 613 LSQVEHFA*RSIA*CCLVTLIPKVIYTNVQSQYLDKRFSYFSYVFLMTF 759
           LSQ+ H     +  CCL T +P ++Y  + +  L KR    S  + MT+
Sbjct: 477 LSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDESDDYTMTW 525


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,837,671
Number of Sequences: 28952
Number of extensions: 308164
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)