Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0112
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    38   0.001
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    37   0.003
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce...    28   1.2  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    28   1.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.7  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    26   4.7  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   6.1  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.1  

>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 361 CSCCGVGPFETRAQQTAHYKHHWHTFNLKRKLFGKSPLS 477
           C+ C V  F     Q  H+K  WH +NLKRK+    PLS
Sbjct: 7   CTTCTVA-FNNAESQKIHWKSDWHHYNLKRKVASLPPLS 44


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +1

Query: 256 VAACMITESHNVIDEQSVLRRLNALTLNGASDGNCCSC--CGVGPFETRAQQTAHYKHHW 429
           +A   + E ++V ++       N   +  ++  N  SC  C +    T  ++ +H K  W
Sbjct: 17  LAKLELREEYSVEEKTDSANLSNQGDIVDSTQKNISSCVNCQIDNLHTLDERKSHIKSDW 76

Query: 430 HTFNLKRKLFGKSPLSIGQY 489
           H FN KRK+    P+S  ++
Sbjct: 77  HRFNTKRKITKLPPVSQDEF 96


>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 104

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +1

Query: 151 QQSEPIMALKPEAVKTKIVKVYEIDEFQKLLKGVHVAACMITESHNVIDEQSVLRRLNAL 330
           ++SE ++ L+PE V+     V  +D      K   V  C I       DE S     +  
Sbjct: 30  EESENVLHLQPEPVRRVRWTVSTVDNEHMNKKKSKV--CCIFHKQRKFDESS-----SDS 82

Query: 331 TLNGASDGNCCSCCGVGPFE 390
             +  SD +C SCC    +E
Sbjct: 83  DSDSDSDSSCSSCCSRNAYE 102


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 523 THCLIHLLSENYTGQWIMEIFQIVSSSS*KCASDAYNE 410
           T C++ LL EN    W  +I   V+++   CA   Y E
Sbjct: 282 TVCIVALLQENDKSAWYKKIADRVAANDGPCAPPEYAE 319


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/59 (18%), Positives = 29/59 (49%)
 Frame = +1

Query: 112 SNNM*NVDIIFQDQQSEPIMALKPEAVKTKIVKVYEIDEFQKLLKGVHVAACMITESHN 288
           S+N+ N  +        P+++L+P  +   +     + +F +   G+H  + +++ S+N
Sbjct: 809 SSNLLNSSLFSSFNSVNPLISLEPNPLNRTLNNSVNLTDFGRKPNGLHSPSSLLSNSNN 867


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 557 RVTYLLQQQDIARRSSLIIMGRSSVFID 640
           RVT   Q +DI R +++++ G +  ++D
Sbjct: 359 RVTVFRQVEDITRTATIVLRGATKTYLD 386


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +2

Query: 518 VSLRKKWRTVRDLRVTYLLQQQDIARRSSLIIMGRSSVF--IDVSYIIRRKNYQRMVMAV 691
           +S+++K R +R ++ T     +++ +R +     + SVF  ++  Y+  +KNYQ  ++A+
Sbjct: 69  ISIKRK-RRIRTVKST---SNKELVQRKASKPTKQKSVFTPLEQQYLELKKNYQETILAI 124


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 418 KHHWHTFNLKRKLFGKSPLSIGQ 486
           K+ WHTF      FG SP+   Q
Sbjct: 242 KNAWHTFKTYVSKFGASPVGTAQ 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,934
Number of Sequences: 5004
Number of extensions: 54402
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)