Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0112
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1229 + 28571131-28571235,28572108-28572656,28572749-285729...    42   4e-04
07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245...    31   1.2  
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    30   1.6  
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347...    29   4.8  
04_04_0871 + 28898262-28898534,28899552-28900015,28900242-289003...    29   4.8  
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074...    28   8.5  

>06_03_1229 +
           28571131-28571235,28572108-28572656,28572749-28572918,
           28573454-28573669,28573787-28573946
          Length = 399

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 361 CSCCGVGPFETRAQQTAHYKHHWHTFNLKRKLFG 462
           C+ C  G F+   QQ  HY+  WH +NLKRK+ G
Sbjct: 6   CNACNAG-FDDEEQQRLHYRSEWHRYNLKRKVAG 38


>07_03_1315 -
           25722757-25722876,25722972-25723328,25723924-25724500,
           25724577-25725265,25725487-25725822,25726190-25726527,
           25726619-25726746,25726906-25727030,25727547-25727589,
           25727714-25727802,25728396-25728511,25729157-25729276,
           25729752-25729794
          Length = 1026

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 298 EQSVLRRLNALTLNGASDGNCCSCCGVGPFETRAQQTA 411
           E ++   L+ALTL  + DGN    CG+G  E  A+ ++
Sbjct: 724 ESALTSHLSALTLKESKDGNVKEICGLGGAEDFAESSS 761


>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 329 KALRRRKTLCSSMTLCDSVIIHAAT 255
           +AL  R ++C S T+C + I+HA T
Sbjct: 365 QALEMRNSVCHSATICSNAIMHAGT 389


>04_04_1094 -
           30832987-30833316,30833530-30834273,30834484-30834742,
           30834821-30835041,30835127-30835375,30835460-30835595,
           30835864-30836207,30836589-30836758,30837080-30837185,
           30837267-30837330,30838462-30838616
          Length = 925

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 329 KALRRRKTLCSSMTLCDSVIIHAAT 255
           +A+  R ++C S T+C + I+HA T
Sbjct: 291 QAVEMRNSVCHSATICTNAIMHAGT 315


>04_04_0871 +
           28898262-28898534,28899552-28900015,28900242-28900356,
           28900510-28901157,28901282-28901374,28901658-28901795,
           28902147-28902206
          Length = 596

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 361 CSCCGVGPFETRAQQTAHYKHHWHTFNLKRKLFGKS 468
           C+ C    FE+  +Q  H+K   H  N+K  + GK+
Sbjct: 66  CNTCA-SEFESLQEQREHFKSDLHRLNVKLSIAGKT 100


>10_07_0053 -
           12406958-12407011,12407012-12407168,12407280-12407410,
           12407592-12407727,12407953-12408224,12408604-12408893,
           12408984-12409285,12409359-12409424,12409506-12409571,
           12409855-12409926,12410013-12410084,12410207-12410281,
           12410367-12410438,12410531-12410663,12411556-12411655
          Length = 665

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 169 LSAQIVDLEI*CPRFTCYYLSDTQYNTLIIVLVALPLDNI 50
           L   + D+    P  +  YL + Q+   I VL  LPLDN+
Sbjct: 158 LQGNMTDVFSNLPSLSTLYLQNNQFTGSINVLANLPLDNL 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,317,232
Number of Sequences: 37544
Number of extensions: 355697
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)