Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0112
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   31   1.2  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 361 CSCCGVGPFETRAQQTAHYKHHWHTFN 441
           C  CG  P E  A Q AH   HWH  N
Sbjct: 203 CDSCGE-PIEPDASQMAHNGQHWHATN 228


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 169  MALKPEAVKTKIVKVYEIDE-FQKLLKGVHVAACMITES-HNVIDEQSVLRRLNALTLNG 342
            + L+ ++++ KI +VY+ D+  +KL     +    + E+   + DE   LR  NAL  N 
Sbjct: 1307 VTLRDKSIEEKISEVYKKDKTIKKLQHEKEIELRALAETIEKLQDESEKLRTENALLENE 1366

Query: 343  ASD 351
            ASD
Sbjct: 1367 ASD 1369


>SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 362 QQLPSEAPFKVKALRRRKTLC 300
           QQLPS+ P K    +RR+T C
Sbjct: 109 QQLPSQEPIKEPPTKRRRTAC 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,393,373
Number of Sequences: 59808
Number of extensions: 420973
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)