Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0112
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.71 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.94 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 250 VHVAACMITESHNVIDEQSVLRRLNALTLNGA 345
           ++ ++C I   +   DEQS + +  + T NGA
Sbjct: 153 IYKSSCEINVEYFPFDEQSCIMKFGSWTYNGA 184


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -1

Query: 389 SNGPTPQHEQQLPSEAPFKVKALRRRKTLCSSMTLCDSVII 267
           + GP   HE Q P     +   L    T  S MT   S I+
Sbjct: 301 TGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIV 341


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 404 CCARVSNGPTPQHEQQL 354
           C AR   GPTP+ +++L
Sbjct: 170 CDARKKKGPTPRQQEEL 186


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 384 IRDPCAANGSL*ASLAHF*LEEETIWKISIIHW 482
           + DP  A  S    LA     +E I K+S I+W
Sbjct: 347 LADPSFAQFSQEIGLASLGASDEEIEKLSTIYW 379


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = +1

Query: 250 VHVAACMITESHNVIDEQSVLRRLNALTLNG 342
           ++ ++C I  ++   D+Q+ + +  + T NG
Sbjct: 146 IYQSSCTIDVTYFPFDQQTCIMKFGSWTFNG 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,605
Number of Sequences: 438
Number of extensions: 3782
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)