Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0108
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    29   5.2  
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898...    28   6.9  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    28   9.1  
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858...    28   9.1  
01_06_1564 - 38276207-38276434,38276571-38276707,38277214-382776...    28   9.1  

>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -1

Query: 482 DKCPNWVIPTSWGDELSNDSFNPTIRSPRI-----IHPCCLRSTLVAGGCRSGLRSG 327
           D+  N  I  SW D    D+ +  +RS  +     IHPC LR  L +   R GL SG
Sbjct: 602 DEIGNLRINNSW-DSQRYDTLDQLLRSVLLSYLCMIHPCRLRKLLKSVASRHGLISG 657


>04_03_0741 +
           19187333-19188868,19189264-19189490,19189578-19189899,
           19190311-19190399,19190882-19191128,19191756-19191884,
           19191967-19192182,19192256-19192379,19192857-19193095
          Length = 1042

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +1

Query: 400 GERIVGLNESFDNSSPQL--VGMTQLGHLSNAHSNSDHIKSTKSSFNSKITTLSTFSILI 573
           GE+   L+    N   +L  V +  LG  S A+ ++DH  S  SS +   ++LS F++L 
Sbjct: 676 GEQYCPLDNLVMNQDEELFTVRLVSLGS-STANLSADHDTSNLSSPHIAASSLSEFAVLG 734

Query: 574 YGNIYCLLGPN 606
           +   Y +  PN
Sbjct: 735 FELGYSMENPN 745


>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +1

Query: 436 NSSPQLVGMTQLGHLSNAHSNSDHIKSTKSSFNSKITTLSTFSILIYGNIY 588
           NS P L  +++    +N  S  D I  +  SF SKIT    +SILI GN Y
Sbjct: 409 NSMPNLQNVSR----NNQRSEMDKIIWSLISF-SKITVPEKYSILIRGNRY 454


>03_06_0474 -
           34184002-34184660,34184755-34184887,34185071-34185886,
           34186013-34186104,34186710-34186863
          Length = 617

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 427 SFDNSSPQLVGMTQLGHLSNAHSN--SDHIKSTKSSFNSKITTLSTFSILIYGNIYCLLG 600
           S D+ S + V  +  G +++ H++  +D   S+  S +S   +++    + +  ++C L 
Sbjct: 301 STDSESEKAVCFSSSGSIADLHASVSTDTSDSSDHSMSSSCLSVNDRWKMTFKKVHCALA 360

Query: 601 PNVVRIYVCGSLEIK 645
            N+  +YV    E++
Sbjct: 361 ANLDSMYVTNHKELE 375


>01_06_1564 -
           38276207-38276434,38276571-38276707,38277214-38277621,
           38277895-38278256,38278427-38278524,38278727-38278863,
           38279346-38279444,38279753-38280053
          Length = 589

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = -2

Query: 298 IVVLGIRSAVAGDVAHVLAERCTYCGAICRVRIVGGFTKTITHEIIKI 155
           ++VLG+  A+   +   ++ RC YC ++  V  +G  ++ +   I+ +
Sbjct: 88  LLVLGVLHAITNPMKE-MSNRCAYCNSVLLVINIGATSRWVGQPIMSL 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,778,015
Number of Sequences: 37544
Number of extensions: 348137
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)