Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0108
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    30   2.0  
U80027-11|AAC48117.2|  106|Caenorhabditis elegans Hypothetical p...    28   8.1  

>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 271  VAGDVAHVLAERCTYCGAICRVRIVGGFTKTITHEIIK 158
            +AG+ A   AE  TYC    R   +G +T  + H I++
Sbjct: 1558 IAGETARAYAEVPTYCYVTGRSVGIGAYTARLAHRIVQ 1595


>U80027-11|AAC48117.2|  106|Caenorhabditis elegans Hypothetical
           protein T28A11.6 protein.
          Length = 106

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 439 SSPQLVGMTQLGHLSNAHSNSDHIKSTKSSFNSKIT-TLSTFSILI 573
           +SP + G++ +   +N H +  HI  TK++ N  I   + TFS+ +
Sbjct: 45  ASPIVFGVSGVVGKNNEHKHGTHINITKTATNPLIVHNVGTFSVSV 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,104
Number of Sequences: 27780
Number of extensions: 280468
Number of successful extensions: 726
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)