Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0108
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 319 CRNVTRWIVVLGIRSAVAGDV 257
           C N+  WI+ L I   VA D+
Sbjct: 418 CFNLMYWIIYLHISDVVADDL 438


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 319 CRNVTRWIVVLGIRSAVAGDV 257
           C N+  WI+ L I   VA D+
Sbjct: 418 CFNLMYWIIYLHISDVVADDL 438


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 458 PTSWGDELSNDSFNP 414
           PT+  DEL  D  NP
Sbjct: 140 PTTTSDELKRDIINP 154


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 458 PTSWGDELSNDSFNP 414
           PT+  DEL  D  NP
Sbjct: 140 PTTTSDELKRDIINP 154


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 458 PTSWGDELSNDSFNP 414
           PT+  DEL  D  NP
Sbjct: 140 PTTTSDELKRDIINP 154


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 458 PTSWGDELSNDSFNP 414
           PT+  DEL  D  NP
Sbjct: 140 PTTTSDELKRDIINP 154


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 458 PTSWGDELSNDSFNP 414
           PT+  DEL  D  NP
Sbjct: 140 PTTTSDELKRDIINP 154


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 458 PTSWGDELSNDSFNP 414
           PT+  DEL  D  NP
Sbjct: 140 PTTTSDELKRDIINP 154


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 458 PTSWGDELSNDSFNP 414
           PT+  DEL  D  NP
Sbjct: 140 PTTTSDELKRDIINP 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,352
Number of Sequences: 438
Number of extensions: 3160
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)