Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0105
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406...    29   3.6  
05_03_0439 + 14028234-14028287,14029394-14029468,14029562-140296...    29   4.8  
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410...    28   6.3  
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    28   6.3  
08_02_0768 + 21007217-21008362                                         28   8.3  
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13...    28   8.3  
02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727     28   8.3  

>05_05_0254 -
           23638544-23640090,23640280-23640408,23640619-23640626,
           23641442-23642682
          Length = 974

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 397 PSEQYAEWVRVPRDVIGNSGSCP 465
           P E    W+ VPRD  G S SCP
Sbjct: 47  PPESPLPWILVPRDADGPSFSCP 69


>05_03_0439 +
           14028234-14028287,14029394-14029468,14029562-14029642,
           14029778-14029934,14030056-14030060,14030152-14030226,
           14030332-14030457,14030604-14030822,14031293-14031406,
           14031498-14031533,14031630-14031764
          Length = 358

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +2

Query: 266 IVDETKQSWADDDDFQILKPNINIKFKDDLIIGQPAT 376
           + ++  + W DD  F+I++       ++D++ G P+T
Sbjct: 304 LANQWNRGWGDDGYFKIIRGTNECGIEEDVVAGMPST 340


>07_01_0551 -
           4105721-4105774,4106090-4106159,4106880-4106945,
           4106985-4107479,4107491-4107672,4107728-4108222
          Length = 453

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 476 AADVAPEGLLTVELPIQPNKLGNISFVA 559
           A DVA EG++TV L ++  K+G ++F A
Sbjct: 172 AVDVADEGIVTVMLAVE--KIGRVAFAA 197


>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 65  DQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYVGPQKNEEVSLVVKVEDY 217
           D+G N++  L         V   +IK +  K YV   KN+E S  V + DY
Sbjct: 189 DEGSNVEVMLDTGKHRAAWVTATVIKMVSSKNYVVRLKNKEGS--VNIVDY 237


>08_02_0768 + 21007217-21008362
          Length = 381

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 239 GNIKISAMAIVDETKQSWADDDDFQILKPNINIKFKDDLIIGQPATVE 382
           G + I  MA+ ++  + W    +  IL+P+ + +  D  ++G P  V+
Sbjct: 292 GRVSIG-MAVSEDGLKGWRRSSELPILRPSDDDEGWDSTVVGSPCLVQ 338


>05_01_0019 -
           129767-129931,130078-130257,130491-130728,130833-131236,
           131284-131427,131709-131995,132071-132150,132563-132714,
           132793-132909,133292-133450,133546-133946,134106-134423,
           135050-135095,135203-135310
          Length = 932

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 2   DIDLVSIGKDFKVTIDIKNVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLY 163
           DID ++ G+D + T+ IKN+ ++  N K  L+     + G    I   I+ K+Y
Sbjct: 717 DIDRIAKGEDSRTTLMIKNIPNK-YNCKLLLAVIDENHRGTYDFIYLPIDFKVY 769


>02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727
          Length = 210

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 625 LPFEHFRGGGSVDVLQLVRLECGHETDI 542
           L  EH R GG    ++LVRL  G E+D+
Sbjct: 132 LRLEHGRAGGEHGPVRLVRLAAGLESDV 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,571,852
Number of Sequences: 37544
Number of extensions: 340098
Number of successful extensions: 1036
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)