Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0105
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   8.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   8.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 443 SGIAGRALRVPAADVAPEG 499
           SGI+ R    P  D++PEG
Sbjct: 519 SGISPRNYMYPNIDISPEG 537


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 352 PDHRAAGNSGTVAFEPSEQYAE 417
           P+H+  G    V  EPS  + E
Sbjct: 67  PEHKPPGPKDLVYLEPSPPFCE 88


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 479 ADVAPEGLLTVELPIQPNKLGNISFVATFKSNELKDIN 592
           A  APEGLL ++L    N+  +I       ++ L+++N
Sbjct: 269 ASNAPEGLLGLKLINAENETAHIKDSLIVLTSALQEMN 306


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 352 PDHRAAGNSGTVAFEPSEQYAE 417
           P+H+  G    V  EPS  + E
Sbjct: 68  PEHKPPGPKDLVYLEPSPPFCE 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,212
Number of Sequences: 438
Number of extensions: 3369
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)