Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0105
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28370.1 68416.m03545 expressed protein 31 0.74
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 29 2.3
At4g04780.1 68417.m00700 expressed protein very low similarity t... 29 2.3
At4g00320.1 68417.m00041 F-box family protein contains F-box dom... 29 2.3
At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containi... 29 3.0
At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S... 28 5.2
At2g20500.1 68415.m02394 expressed protein 28 6.9
At1g33450.1 68414.m04140 hypothetical protein low similarity to ... 28 6.9
At5g41830.1 68418.m05093 F-box family protein-related contains a... 27 9.2
>At3g28370.1 68416.m03545 expressed protein
Length = 292
Score = 31.1 bits (67), Expect = 0.74
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +2
Query: 26 KDFKVTIDIKNVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYVGPQKNEEVSLV-V 202
++F+ T+D SD G I A++ AS +G + IK + ++ K EE L
Sbjct: 124 REFQKTVDSSLSSDDGIGITANVKASE-DGSGADLEAIKGMLSEVNSQLAKEEEGYLAEQ 182
Query: 203 KVEDYLPKLVEYGNIKISAM-AIVDET 280
K+++ L K ++ K+S M AI D+T
Sbjct: 183 KIQEQLQKELDDYEKKMSLMEAITDKT 209
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 50 IKNVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYV-----GPQKNEEVSLVVKVED 214
IK D + + S S Y + DI+++ +GKLYV GP+ +EE V+D
Sbjct: 120 IKRKFDSKKKTETDKSEESVYLS----DILREYKGKLYVPEQVFGPELSEEEEFEKNVKD 175
Query: 215 YLPKL 229
LPK+
Sbjct: 176 -LPKM 179
>At4g04780.1 68417.m00700 expressed protein very low similarity to
SP|Q13503 RNA polymerase II holoenzyme component SRB7
(RNAPII complex component SRB7) {Homo sapiens}
Length = 381
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 50 IKNVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYVGPQKNEEVSLVV 202
++N+SD N+ A++ + ++ ++IKK+EG+L + EE+ V+
Sbjct: 85 VENISDLRMNVMANMELLNKNAKQMEEELIKKMEGELLTMKENVEELGHVM 135
>At4g00320.1 68417.m00041 F-box family protein contains F-box domain
Pfam:PF00646
Length = 507
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 348 SLNLMLMFGLRIWKSSSSAQDCFVSSTMAIADILMF 241
+L +L+ L IWK SS + CFVS ++ IL F
Sbjct: 204 TLEELLLMNL-IWKESSEPEPCFVSVSVRTLKILKF 238
>At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1030
Score = 29.1 bits (62), Expect = 3.0
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +2
Query: 20 IGKDFKVTIDIKNVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKL-YVGPQKNEEVSL 196
I K KV + +++++D I +F Y F + KI+ L + KN+E+ L
Sbjct: 304 IAKSEKVDV-VQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCL 362
Query: 197 VVKVEDYLPKLVEYGNIKISAMAIVDETKQSWADDDD 307
K + L K + N + A+ IVD K+ DD +
Sbjct: 363 DAKYFEILVKGLCRANRMVDALEIVDIMKRRKLDDSN 399
>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
Length = 168
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 164 VGPQKNEEVSLVVKVEDYLPKLVEYGNIKISAMAIVDETKQSWADDDDFQILKPNINIKF 343
V +K +S V+D+L + + +++A AI+ + WA ++F +KP
Sbjct: 30 VKKKKKTNMSWQTYVDDHL--MCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGI 87
Query: 344 KDD 352
KDD
Sbjct: 88 KDD 90
>At2g20500.1 68415.m02394 expressed protein
Length = 136
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 24 AKTSRSQSTSRMFRIRDVT*RHH*AHRVSTTTELNLTSSKKSKEN 158
AK + T+ ++R +HH ++ ST+ + L SS +S+EN
Sbjct: 11 AKRAWKSFTASFHKLRGSKTKHHTKYKASTSDKHFLRSSHRSREN 55
>At1g33450.1 68414.m04140 hypothetical protein low similarity to
MtN20 [Medicago truncatula] GI:2598591
Length = 160
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +2
Query: 53 KNVSDQGRNIKASLSASSFYYNGVKFDIIKKIEGKLYVGPQKNEEVSLVV 202
+N+SD N+ A++ + ++ ++IKK+EG+L + EE+ V+
Sbjct: 86 ENISDLRMNVMANMELLNKNGKQMEEELIKKMEGELLTMKENVEELGHVM 135
>At5g41830.1 68418.m05093 F-box family protein-related contains a
novel domain similar to F-box that is shared among other
proteins in Arabidopsis; similar to proteins At3g54160,
At1g47920 (syntaxin SYP81), At3g44180, At1g56610,
At3g58890, At1g48390, At3g59270 [Arabidopsis thaliana]
Length = 463
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 375 VAGCPMIRSSLNLMLMFGLRIWKSSSSAQDCFVSSTMAIADILMF 241
++GC M++ L + L IW+ SS + C+V+ ++ IL F
Sbjct: 148 LSGCHMLKELLLMNL-----IWEESSEPEPCYVTVSVPTLKILKF 187
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,912,372
Number of Sequences: 28952
Number of extensions: 267297
Number of successful extensions: 813
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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