Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0104
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...   190   2e-49
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...   134   8e-33
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    30   0.27 
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    29   0.81 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   1.9  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   5.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.7  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    25   10.0 

>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score =  190 bits (462), Expect = 2e-49
 Identities = 89/160 (55%), Positives = 116/160 (72%)
 Frame = -3

Query: 672 FRVHQFEKADQFVLTSPHDNASWQMMDEMINNAEEFCKALGLPYRVVNIVSGALNHAASK 493
           FRVH FEK +QFVLT P    SW+   EMIN+AE+F K+L LPYR+V IVSGALN+AA+K
Sbjct: 285 FRVHAFEKIEQFVLTDPEK--SWEAFTEMINHAEDFYKSLELPYRIVAIVSGALNNAAAK 342

Query: 492 KLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQTKKMNAATEYVHMLNATMCATTR 313
           K DLEAWFP  G ++ELVSCSNC +YQ+R L +R G  K  +   +YVH LN+T+CAT R
Sbjct: 343 KYDLEAWFPFQGEYKELVSCSNCTDYQSRNLEIRCGVKKMGDREKKYVHCLNSTLCATER 402

Query: 312 VICAILEVHQTEDGIKVPEILKPWLPKQYQELIPFVKPAP 193
            +C ILE +QT DG+ VP++L+P++    +  +PF K  P
Sbjct: 403 ALCCILENYQTPDGVNVPKVLQPYMGG--KTFLPFTKELP 440


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score =  134 bits (325), Expect = 8e-33
 Identities = 68/150 (45%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
 Frame = -3

Query: 672 FRVHQFEKADQFVLTSPHDNASWQMMDEMINNAEEFCKALGLPYRVVNIVSGALNHAASK 493
           +R+H+F K + F  T  H + S +M +E++N  +EF + L +P R++N+ +  L  +AS+
Sbjct: 306 YRLHEFTKVELFAWT--HPSRSSEMFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQ 363

Query: 492 KLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQTKKMNAATEYVHMLNATMCATTR 313
           K D+EAW P   ++ E+ S SNCLEYQARRLL RY   K     + +VH LN T  A  R
Sbjct: 364 KYDIEAWMPARQSYGEITSASNCLEYQARRLLTRYRNDKD----SGFVHTLNGTAAAIPR 419

Query: 312 VICAILEVHQTEDG-IKVPEILKPWLPKQY 226
           +I AILE HQ EDG +KVPE L P++ K+Y
Sbjct: 420 LIIAILENHQQEDGTVKVPETLVPYIHKEY 449


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = -3

Query: 450 RELVSCSNCLEYQ-----ARRLLVRYGQTKKMN 367
           REL SC NC+ YQ     ++RL   Y  TKK N
Sbjct: 23  RELPSCQNCIVYQEECHYSKRLKRSYSATKKKN 55


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 270 IKVPEILKPWLPKQYQELIP 211
           + +  +L+PWLP + QE++P
Sbjct: 289 VAIVRVLRPWLPSKLQEVLP 308


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 498  SKKLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRY 388
            SKKL+ E W P   +F E++  ++ LE +++ L V +
Sbjct: 1394 SKKLEEEYWLPFLLSFNEIICEASDLEVRSKALKVLF 1430


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 504 AASKKLDLEAWFPGSGAFRELV 439
           +A+KK  ++ W PGSG   ++V
Sbjct: 156 SAAKKYGIQFWGPGSGIIHQIV 177


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 440 TSSLNAPDPGNQASKSSFLEAAWFRAPDTMFTTRYGSPSALQNSSALFIISSIICQDALS 619
           T  +  P P +  S  S +         + FTT  GSP    N+S+ F+ SS+I   +LS
Sbjct: 184 TDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTTTGSP--YYNTSS-FLPSSVISSASLS 240


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 258 EILKPWLPKQYQELIPF 208
           E+LKPW+  +  ELI F
Sbjct: 45  EVLKPWIATRLNELIGF 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,421
Number of Sequences: 5004
Number of extensions: 48931
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)