Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0104
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 198 3e-51
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 198 3e-51
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 107 6e-24
07_03_1052 + 23598547-23600181 36 0.039
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 30 1.9
12_01_0084 - 678324-679643 29 4.5
11_01_0083 - 629885-631189 29 4.5
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 28 5.9
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 28 5.9
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 7.8
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 28 7.8
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 198 bits (483), Expect = 3e-51
Identities = 87/145 (60%), Positives = 116/145 (80%)
Frame = -3
Query: 672 FRVHQFEKADQFVLTSPHDNASWQMMDEMINNAEEFCKALGLPYRVVNIVSGALNHAASK 493
FRVHQFEK +QF +TSP+DN SW+M +EMI N+E+F K +GLPY++V+IVSGALN AA+K
Sbjct: 228 FRVHQFEKIEQFCVTSPNDNESWEMHEEMIKNSEDFYKEIGLPYQLVSIVSGALNDAAAK 287
Query: 492 KLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQTKKMNAATEYVHMLNATMCATTR 313
K DLEAWFP S +RELVSCSNC ++QARRL + YGQ K + ++VHMLN+T+ AT R
Sbjct: 288 KYDLEAWFPASKTYRELVSCSNCTDFQARRLGIGYGQKKNDEQSKQFVHMLNSTLTATER 347
Query: 312 VICAILEVHQTEDGIKVPEILKPWL 238
+C ILE Q E+G++VP+ L+P++
Sbjct: 348 TLCCILENFQRENGVEVPKALQPYM 372
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 198 bits (483), Expect = 3e-51
Identities = 87/145 (60%), Positives = 116/145 (80%)
Frame = -3
Query: 672 FRVHQFEKADQFVLTSPHDNASWQMMDEMINNAEEFCKALGLPYRVVNIVSGALNHAASK 493
FRVHQFEK +QF +TSP+DN SW+M +EMI N+E+F K +GLPY++V+IVSGALN AA+K
Sbjct: 269 FRVHQFEKIEQFCVTSPNDNESWEMHEEMIKNSEDFYKEIGLPYQLVSIVSGALNDAAAK 328
Query: 492 KLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQTKKMNAATEYVHMLNATMCATTR 313
K DLEAWFP S +RELVSCSNC ++QARRL + YGQ K + ++VHMLN+T+ AT R
Sbjct: 329 KYDLEAWFPASKTYRELVSCSNCTDFQARRLGIGYGQKKNDEQSKQFVHMLNSTLTATER 388
Query: 312 VICAILEVHQTEDGIKVPEILKPWL 238
+C ILE Q E+G++VP+ L+P++
Sbjct: 389 TLCCILENFQKENGVEVPKALQPYM 413
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 107 bits (258), Expect = 6e-24
Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 13/158 (8%)
Frame = -3
Query: 672 FRVHQFEKADQFVLTSPHDNASWQMMDEMINNAEEFCKALGLPYRVVNIVSGALNHAASK 493
+RVHQF K + FV P + S + +E+I EE +LGL ++ +++ +G L A +
Sbjct: 384 YRVHQFSKVEMFVFCRPEE--SDKCHEELITIEEELYASLGLHFKTLDMATGDLGAPAYR 441
Query: 492 KLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYGQT------------KKMNAATEYV 349
K D+EAW PG + E+ S SNC +YQ+RRL +R+ + K + T++V
Sbjct: 442 KFDIEAWMPGLDRYGEISSASNCTDYQSRRLGIRFRPSPADPPPANAKKGKGSSGPTQFV 501
Query: 348 HMLNATMCATTRVICAILEVHQTEDG-IKVPEILKPWL 238
H LNAT A R+I ILE Q EDG + +PE L+P++
Sbjct: 502 HTLNATAVAVPRLIICILENFQQEDGTVVIPEPLRPFM 539
>07_03_1052 + 23598547-23600181
Length = 544
Score = 35.5 bits (78), Expect = 0.039
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 424 SGVPSQKIACKVRSDEKDERCH*IRAHAERDHVRHHQGHLRHTRGTPDRG-RHQGTGNPQ 248
S +PSQ + SD CH RA ++ V HH G H +PD G Q T N
Sbjct: 14 SNIPSQNLKQFQYSDNPQHPCHPYRAPSDTHVVPHHYGLKSH---SPDAGYESQATPNKY 70
Query: 247 TLAS 236
TL S
Sbjct: 71 TLDS 74
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 325 RHHQGHLRHTRGTPDRGRHQGTGNPQTL 242
RHHQ H R G P R +GT +P+TL
Sbjct: 30 RHHQRHRRRRGGQPAPNR-RGTSSPKTL 56
>12_01_0084 - 678324-679643
Length = 439
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 413 WYSRQLLQETSSLNAPDPGNQASKSSFLEAAWFR 514
W+SR+L + + P+P + S E+ WFR
Sbjct: 235 WFSRKLQKLLYKIMDPNPSTRISIQKIKESTWFR 268
>11_01_0083 - 629885-631189
Length = 434
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 413 WYSRQLLQETSSLNAPDPGNQASKSSFLEAAWFR 514
W+SR+L + + P+P + S E+ WFR
Sbjct: 235 WFSRKLQKLLYKIMDPNPSTRISIQKIKESTWFR 268
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 660 QFEKADQFVLTSPH-DNASWQMMDEMINNAEEFCKALGLPYRVVNIVSGALN 508
QF K+ P+ + W+ + + E +CK YRV+ +VSG N
Sbjct: 610 QFIKSFPLPDAKPNCQSGPWEPSFDDLEATENYCKIARSAYRVIKVVSGPHN 661
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = -2
Query: 421 GVPSQKIACKVRSDEKDERCH*IRAHAERDHVRHHQGHLRHTRGTPDRGRHQGTGNPQTL 242
G + K +D +D + +R + + H H H G G +G G P L
Sbjct: 128 GYQIHDVEAKYYADGED--AYDMRKPLRQPQPKKHHHHHHHHHGPEGNGEAEGVGEPVGL 185
Query: 241 ASQAVS 224
AS A++
Sbjct: 186 ASGALT 191
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 385 SDEKDERCH*IRAHAERDHVRHHQGHLRHTRGTPDRGRH 269
+ E+ R H RAH+ R H HH H RH RH
Sbjct: 684 AQERARRRH-KRAHSHR-HSHHHDAHKRHKTELAGHRRH 720
>04_04_1354 - 32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -2
Query: 346 HAERDHVRHHQGHLRHTRGTPDRGRHQGTGNP 251
H ++H HH GH + G G G NP
Sbjct: 944 HPGQEHHHHHYGHPGRSNGPSGSGNKPGYHNP 975
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,310
Number of Sequences: 37544
Number of extensions: 360288
Number of successful extensions: 1107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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