Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0104
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   1e-16
SB_1606| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.28 
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 30   2.0  
SB_20618| Best HMM Match : PSCyt1 (HMM E-Value=0.64)                   29   4.5  
SB_44764| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_25001| Best HMM Match : AlkA_N (HMM E-Value=6.9)                    28   7.9  

>SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = -3

Query: 360 TEYVHMLNATMCATTRVICAILEVHQTEDGIKVPEILKPWLPKQYQELIPFVKPAPID 187
           TEYVHMLNATMCA +RVICAILE +QTE+G+ +P+ L P+LP Q    + FVKPAPID
Sbjct: 335 TEYVHMLNATMCAVSRVICAILENNQTEEGVVMPQALHPYLP-QDLHFLKFVKPAPID 391


>SB_1606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 309 ICAILEVHQTEDGIKVPEILKPWLPKQYQELIPFVKPAPIDVE 181
           +C   E+H  ++G K P  L+P LP +Y++    VK AP D E
Sbjct: 19  VCKRHELHSHQEGAK-PAELRPELPHEYEKEEEDVKGAPADSE 60


>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = -3

Query: 441 VSCSNC--LEYQARRLLVRYGQTKKMNA-ATEYVHMLNATMCATTRVICAIL-EVHQTED 274
           V C +C  LE+Q      R+ +  K+    TE+ H L      T+R +C +  +  Q+E 
Sbjct: 282 VFCESCYNLEHQGNERKRRHEKQSKLRPICTEHRHPLEFFDFTTSRALCVLCKKALQSES 341

Query: 273 GIKVPEILKPWLPK 232
            +++ E ++  +PK
Sbjct: 342 QVELIETIEEAVPK 355


>SB_20618| Best HMM Match : PSCyt1 (HMM E-Value=0.64)
          Length = 266

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 301 GANDPGGGAHGRVQHVHVFSGSVHLFRLTVPYKQSSGLV 417
           G+ D GGG +    + H   GSV ++R  V Y   SGLV
Sbjct: 25  GSVDGGGGGYYNGDNDHDSGGSVDVWRSYVYYDYYSGLV 63


>SB_44764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 398 SNLLAWYSRQLLQETSSLNAPDP--GNQASKSSFLE 499
           S+ + W SRQL +E   L  PDP  G +A  S  LE
Sbjct: 60  SDHMVWRSRQLRREKGILADPDPKKGGRALPSDVLE 95


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 343 HVHV-FSGSVHLFRLTVPYKQSSGLVLQTV 429
           HVH   +   H+F   +PYK S+GL+++ V
Sbjct: 704 HVHKDITFQKHVFVFCMPYKSSTGLIIRAV 733


>SB_25001| Best HMM Match : AlkA_N (HMM E-Value=6.9)
          Length = 370

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 348 HMLNATMCATTRVICAILEVHQTEDGIKVPEILKPWLPKQY 226
           H L A +C +    C   ++      ++   +L+PW+PK Y
Sbjct: 330 HPLAARVCFSVENCCRPRDIGGYCTSLRATPLLRPWMPKCY 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,446,329
Number of Sequences: 59808
Number of extensions: 396399
Number of successful extensions: 1383
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)