Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0104
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    29   0.041
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 322 HHQGHLRHTRGTPDRGRHQGTGNPQTL 242
           HHQ H +H    P +G+HQ     Q L
Sbjct: 169 HHQMHTQHPHMQPQQGQHQSQAQQQHL 195


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 589 FVHHLPRCVIMRR 627
           F+H LPR ++MRR
Sbjct: 349 FIHILPRLLVMRR 361


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 589 FVHHLPRCVIMRR 627
           F+H LPR ++MRR
Sbjct: 349 FIHILPRLLVMRR 361


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 589 FVHHLPRCVIMRR 627
           F+H LPR ++MRR
Sbjct: 345 FIHVLPRLLVMRR 357


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 360 WQRSSFSSDRTLQAIFWLGT 419
           W++ +  SDR L  +F+L T
Sbjct: 421 WKQVALVSDRALLCVFFLTT 440


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/48 (20%), Positives = 20/48 (41%)
 Frame = +2

Query: 386 PYLTSNLLAWYSRQLLQETSSLNAPDPGNQASKSSFLEAAWFRAPDTM 529
           P++    L W  R L+   +  + P+  +    S +     F  PD++
Sbjct: 348 PWVRQVFLNWMPRLLMMRRTPYSTPEYDDTYMDSGYTNEIDFSFPDSV 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,851
Number of Sequences: 438
Number of extensions: 3642
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)