Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0103
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    29   0.93 
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    26   6.6  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   8.7  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 238 YSNHSTYNTIVNCKLT*YYDSVHSGTIT*YILFLLHI 128
           Y+ + T   +V  ++T  YD +H G I  Y  F+ H+
Sbjct: 785 YTLNLTITEVVKAEVTCLYDDIHEGIIPAYNTFVEHL 821


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 200 QTNLIL*LSTFRHDNIIHFIST 135
           + N++  LS  RH NIIHF+ +
Sbjct: 55  EVNILRQLSRSRHRNIIHFVES 76


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 413 ISKLKRHIEINLYFCLDKLHLKTLN 339
           +S+L  + E  L F LDK+HL+  N
Sbjct: 828 LSQLSSNNEFQLSFLLDKMHLRLEN 852


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,555
Number of Sequences: 5004
Number of extensions: 35228
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)