Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0101
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.1  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   4.4  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   5.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   5.8  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   7.6  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     25   7.6  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   7.6  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   7.6  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   7.6  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 310 ILQHRRPRLPLMQLEAPCSFNFCSLRA 390
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 469 DTVNAEPVGDRESGQKYGLLSLTSSHRQPISSPAMYRPSLNAMSPLAF 612
           ++++   +G  E+  + G +SLT S   P+S+ +   P  N  S  AF
Sbjct: 378 ESLSQSLLGTVEAPAEVGAISLTESFNSPVSNSSPNVPINNFTSTCAF 425


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 308 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 201
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 439 DSSTVKPNETDTVNAEPVGDRESGQKYGLLSLTSSHRQPISSPAMYRPSLNAMSPLAFSA 618
           DS+       + V+  P+    SGQ   L+S  +SH  P  SP M   + +  +    S+
Sbjct: 53  DSTESTKRSENFVSHIPLTPSHSGQSEKLMSTRTSH-SPYISPTMSYTNHSPANLTRNSS 111

Query: 619 FPNRGYTAFNKRP 657
           F ++ Y+   + P
Sbjct: 112 FNHQHYSTTLRSP 124


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 541 SHRQPISSPAMYRPSLNAMSPLAFSAFPNRGYTAFNKRP 657
           S    +S+ A   PS+NA S   +S     G  +FN +P
Sbjct: 16  SSTDTLSTSASLHPSMNAGSVNEYSEQQRHGTNSFNGKP 54


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 547 DANLSKITVHIFDRFPD 497
           D +L K+ VH F RFPD
Sbjct: 379 DRSLPKVHVHCFCRFPD 395


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 511 QKYGLLSLTSSHRQPISSPAMYRPSLNAMSPLAFSAFPNR 630
           Q+ GL +     + P    A + P +++ SP+ FS  P+R
Sbjct: 270 QQSGLANNVEKSQTPSYMSANHLPKVDSKSPIPFSVPPSR 309


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 466 TDTVNAEPVGDRESGQKYGLLSLTSSHRQ 552
           T  V+A P  +    Q+ GLL +T SHR+
Sbjct: 616 TSNVDAIPPANDLQNQENGLLLITESHRK 644


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 223 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 360
           +++ FL L PLS    ++  +  ++P+   +QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,546
Number of Sequences: 5004
Number of extensions: 49491
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)