Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0101
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 439 RTLNFLNQHSSFY 401
           RTLN LN H S Y
Sbjct: 412 RTLNSLNNHKSIY 424


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 493 GDRESGQKYGLLS 531
           GDR SG+ YG+ S
Sbjct: 114 GDRASGKHYGVYS 126


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 442 SSTVKPNETDTVNAEPVGDRES 507
           S + KP  +  +NAEP    ES
Sbjct: 549 SDSTKPETSKGINAEPSNIEES 570


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 493 GDRESGQKYGLLS 531
           GDR SG+ YG+ S
Sbjct: 114 GDRASGKHYGVYS 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,975
Number of Sequences: 438
Number of extensions: 3405
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)