Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0101
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             29   2.1  
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    28   4.9  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   8.6  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   8.6  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 284 ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 192
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +1

Query: 511 QKYGLLSLTSSHRQPISSPAMYRPSLNAMSPLAFSAFPNRGYTAFNKRP 657
           Q Y      S H  P S+P+   PS    SP A S  PN  Y+ FN+ P
Sbjct: 69  QNYTPYGQNSEHVPP-SAPSFTSPSQPPPSPPATSLNPN-SYSTFNQPP 115


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = +1

Query: 280 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*GSLEYDSS 447
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G    +  
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVGKSFREQI 89

Query: 448 TVKPNETDTVN 480
            +     D V+
Sbjct: 90  ILTHEHADAVH 100


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -3

Query: 374 KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 276
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,604,590
Number of Sequences: 28952
Number of extensions: 266454
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)