Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0100
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 2.2
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.9
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 27 2.9
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 2.9
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 2.9
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.9
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 6.7
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 26 6.7
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 26 6.7
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 6.7
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 8.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 8.9
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 307 LTEDSGLALSLTISHSPSGEPCA 239
+T+D GLA IS SP G P A
Sbjct: 1066 MTKDKGLACRFIISASPKGRPVA 1088
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 31 FIFIFNVNHSISLCSVDLHEIYIFSCDCITLHKF 132
+IF+F +N ++ C E Y+FS +CI +F
Sbjct: 135 YIFLFALNQTLQECI----EEYVFSSECIKYRQF 164
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 260 TIR*AVCLFIYDGNENITSKSCMVTIIYVYCFKYIVYLDRVTLNLCNV 117
T+ A GNE+ SC +I+Y YC + L R+ + N+
Sbjct: 23 TVSSAPSFSFVSGNESADLDSCASSIVYAYCLQR-KQLGRIVVPFFNI 69
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 31 FIFIFNVNHSISLCSVDLHEIYIFSCDCITLHKF 132
+IF+F +N ++ C E Y+FS +CI +F
Sbjct: 135 YIFLFALNQTLQECI----EEYVFSSECIKYRQF 164
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 31 FIFIFNVNHSISLCSVDLHEIYIFSCDCITLHKF 132
+IF+F +N ++ C E Y+FS +CI +F
Sbjct: 107 YIFLFALNQTLQECI----EEYVFSSECIKYRQF 136
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 31 FIFIFNVNHSISLCSVDLHEIYIFSCDCITLHKF 132
+IF+F +N ++ C E Y+FS +CI +F
Sbjct: 135 YIFLFALNQTLQECI----EEYVFSSECIKYRQF 164
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 427 VYLKCVLLAKRCNVCKSINGI-WCGDS 350
VYL ++L C VC + GI W G S
Sbjct: 455 VYLNFIILFSMCFVCAVVEGIAWRGHS 481
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 261 EWLMVRDRAKPLSSVKPLRSVH 326
++L V D +P +S KP RSVH
Sbjct: 257 QYLHVHDIRRPDASTKPARSVH 278
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -3
Query: 547 YIDLSDTSVND*KITT*IVYRHFPDIKS---QKIFPFFGCFKEVYLKCVLLAKRCN 389
Y++L+ V D K + VYR F DI + I P C V L ++ +R N
Sbjct: 720 YVELTRFDVKDSKSSAYEVYRVFSDILHIFLKLIHPIVPCISGVMLHSKIIPERKN 775
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +3
Query: 204 RSNVFIAIVDKQ---AHGSPDGEWLMVRDRAKPLSSVKPLRSVHF 329
RS FI + D + AH W + +D +K +S SV+F
Sbjct: 349 RSRYFIMLCDNETAIAHAKKTSIWAVKKDSSKRISDAYKKASVYF 393
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 265 HSPSGEPCACLSTMAMKTLLRNH 197
H+P G PC L+ +A K + H
Sbjct: 561 HTPDGSPCGLLNHLARKCEIVTH 583
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 495 SFIDIFLTLNLRRYSLFLAVS-KKFI 421
SF+D+ LN++RY F+ S KFI
Sbjct: 387 SFVDVVKQLNMQRYDSFIKPSLPKFI 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,106
Number of Sequences: 5004
Number of extensions: 69389
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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