Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0100
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0070 + 582659-583426,583535-583624,584130-584208,584387-58...    29   3.1  
09_02_0406 - 8629287-8629304,8629384-8629865,8629977-8630291,863...    28   9.3  

>06_01_0070 +
           582659-583426,583535-583624,584130-584208,584387-584493,
           584619-584740,585003-585030,587148-587390,587986-588153,
           589133-589226,589648-589746,589995-590150,590379-590629
          Length = 734

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/61 (21%), Positives = 34/61 (55%)
 Frame = +3

Query: 234 KQAHGSPDGEWLMVRDRAKPLSSVKPLRSVHFKIFFYYVESPHQMPLIDLQTLHRLANNT 413
           K+ +  P+  +  + D  +  ++ + ++    KI F+  ++PH+ P ++L T+HR+ +  
Sbjct: 668 KERYDGPNVRFCAIGDGHEECTAAQIMKWPFVKIEFH-PDAPHRFPGLNLPTIHRIMDTV 726

Query: 414 H 416
           +
Sbjct: 727 Y 727


>09_02_0406 -
           8629287-8629304,8629384-8629865,8629977-8630291,
           8630381-8630576
          Length = 336

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 437 TAKKREYLLRFNVRKMSINDLCSDFLVINRS 529
           T K R  LLR   R++S  DLC +F ++  S
Sbjct: 6   TLKSRLILLRKVARRLSTRDLCEEFCLLRIS 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,763,011
Number of Sequences: 37544
Number of extensions: 362740
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)