Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0100
         (762 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   4.5  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   5.9  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 311  WLNGRQWLGSVPDH*PLTIR*A-VCLFIYDGNENITSKSCMV 189
            W +G  WL   P H P  I     C    +  +  T+ +CMV
Sbjct: 1187 WWHGPDWLVKDPKHWPKNIESGNTCETAKEEKQTKTTLTCMV 1228


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/47 (21%), Positives = 19/47 (40%)
 Frame = +3

Query: 174 HINYCDHT*FRSNVFIAIVDKQAHGSPDGEWLMVRDRAKPLSSVKPL 314
           H  YC +  FR   +++ + +     PD  W     + K   + K +
Sbjct: 441 HSLYCSYNRFRYRRYLSKIQRNLCRWPDSFWRFYNSKTKSTHTPKSI 487



 Score = 23.4 bits (48), Expect = 7.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 167 FKYIVYLDRVTLNLCNVMQSHENMYISCKSTEH 69
           F+Y  YL ++  NLC    S    Y S   + H
Sbjct: 450 FRYRRYLSKIQRNLCRWPDSFWRFYNSKTKSTH 482


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 831,536
Number of Sequences: 2352
Number of extensions: 16484
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)