Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0100
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ...    30   1.9  
At5g33210.1 68418.m03923 zinc finger protein-related similar to ...    29   2.6  
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ...    29   2.6  

>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 516

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 300 KTVAWLCP*PLATHHQVSRVLVYLRWQ*KHYF 205
           K   +LCP P   HH  SR L  L    KHY+
Sbjct: 120 KRKVYLCPEPTCVHHDPSRALGDLTGIKKHYY 151


>At5g33210.1 68418.m03923 zinc finger protein-related similar to
           lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702),  TIGR01623: putative zinc
           finger domain, LRP1 type
          Length = 173

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 741 VCMCCVKYMAVCVMFCLLI 685
           +C C VKY+ +C+  CLL+
Sbjct: 141 ICHCNVKYLFMCIYICLLL 159


>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 602

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 300 KTVAWLCP*PLATHHQVSRVLVYLRWQ*KHYF 205
           K   +LCP P   HH  SR L  L    KHY+
Sbjct: 118 KRKVYLCPEPSCVHHDPSRALGDLTGIKKHYY 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,500
Number of Sequences: 28952
Number of extensions: 328071
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)