Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0099
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    27   0.80 
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   3.2  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   5.6  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    24   7.4  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    24   9.8  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -2

Query: 330 SVPALSLKNLAKIFL*SNKVGKYYLDQLSVYKNAN*VAMFTLELPLYFHCHLRIRLQDRQ 151
           S+  L  K++  +    NKV      Q SV KN   + MF   LP Y+H H+ I   D +
Sbjct: 196 SIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQ--LKMFVHYLPSYYHLHVHILHVDHE 253


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 103 LTCPLKEGTLADYKATLPILKSY--PKVTVEVKWELQSEHGDLICVLINAQLV 255
           L  PL    L +    +P +  Y   K   +V+W+ Q    DL CV+ +++ +
Sbjct: 16  LAYPLPPIILTNPLTWIPYIYRYLFRKTPRQVQWQCQLHESDLSCVVTDSEAI 68


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 121 EGTLADYKATLPILKSYPKVTVEVK 195
           + +  D KATLP+ KS   VT E++
Sbjct: 506 DSSSTDGKATLPVSKSSDNVTFELE 530


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 108 GQPVVLARVRLRQGERYRDVHDDPV 34
           G+P +L  +  R+G +   VHD  V
Sbjct: 126 GEPTILLGIPKREGRKTNPVHDKAV 150


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/51 (19%), Positives = 22/51 (43%)
 Frame = +1

Query: 64  FPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVEVKWELQSEH 216
           F  P +     +G +C L     ++    +P L++  +    ++W +Q  H
Sbjct: 227 FEKPYNTTKSIHGESCSLTAAIASNLACNIPPLQAIHEALYSIEWAIQRVH 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,003
Number of Sequences: 5004
Number of extensions: 31438
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)