Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0099
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913...    28   2.4  
04_02_0008 + 8473198-8475523,8475618-8475967                           27   7.2  
07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521...    26   9.6  

>04_03_0434 +
           15889712-15889797,15890086-15890287,15891184-15891323,
           15891420-15891559,15891762-15891913,15892773-15892902,
           15892990-15893141
          Length = 333

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 139 YKATLPILKSYPKVTVEVKWELQSEHGDL 225
           +KATL +L SY     E KWE ++   DL
Sbjct: 174 FKATLELLVSYKDQVAESKWENEAAAEDL 202


>04_02_0008 + 8473198-8475523,8475618-8475967
          Length = 891

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -2

Query: 330 SVPAL-SLKNLAKIFL*SNKVG 268
           SVPAL SL+NL K+ L SN++G
Sbjct: 223 SVPALGSLRNLNKLLLGSNRLG 244


>07_01_0688 -
           5211484-5211626,5211730-5211826,5211930-5212105,
           5212240-5212631,5212712-5212960,5213046-5213188,
           5213283-5213402,5214491-5214835
          Length = 554

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -3

Query: 155 GSVAL*SARVPSLRGQVSPLSLHASDSGRGNGI 57
           G+  +   ++  ++ ++S L +H  +SG+G GI
Sbjct: 226 GANGIGGLKLEEIKAKISGLDIHVRNSGKGEGI 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,987
Number of Sequences: 37544
Number of extensions: 224203
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)