Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0099
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)        50   5e-07
SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   4e-05
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.45 
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     29   1.0  
SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)              28   2.4  
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)                 28   2.4  
SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)                  27   5.5  
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)                  27   5.5  
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)              26   9.6  

>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
          Length = 167

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = +1

Query: 31  VHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVEVKWELQS 210
           V G+I  + +PFPL   + C+++G+ CP+  G  A     + +   YP + + +K+EL+ 
Sbjct: 75  VFGIIGGVQVPFPLKNPNVCENHGVKCPINAGDSATLDLNIYVSNLYPSLKLIIKFELKG 134

Query: 211 EHGDLI-CVLINAQL 252
               L+ C   +AQ+
Sbjct: 135 GDNKLVFCGEFSAQI 149


>SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 34  HGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVEVK 195
           H +I  +P+P P+P SDAC+  GL+CP+  G  + +K    I   +P   + +K
Sbjct: 76  HAIIDKLPLPLPIP-SDACQGYGLSCPVDSGVKSMFKIHQAIESEFPVGNLTLK 128


>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 49  NIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVEVKWELQSEHGDLI 228
           N  +  P+  S     N + C +K   +   +   P+  +   V VEV WE +SEH  L+
Sbjct: 408 NASLGRPVDVSQTSNGNAVACQVKAINMTVRELVKPMFSACADVCVEVSWE-ESEHQCLV 466


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = +1

Query: 67  PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP 174
           PLP +  C D      NG TC    GT ++  + LP+ K  P
Sbjct: 372 PLPNAVCCDDGVHCCPNGYTCNSSSGTCSEGDSVLPLFKKTP 413



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
 Frame = +1

Query: 67  PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP----KVTVEVKWELQSEH 216
           PLP +  C D      NG TC    GT     + LP+ K  P    K  V      Q   
Sbjct: 297 PLPNAVCCDDGVHCCPNGYTCDTASGTCNKGDSVLPLFKKTPAKQLKNVVCPDGTSQCPD 356

Query: 217 GDLICVLINAQLV*IVLPDFI 279
           G+  C L + Q     LP+ +
Sbjct: 357 GNTCCKLSSGQYGCCPLPNAV 377



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
 Frame = +1

Query: 67  PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP----KVTVEVKWELQSEH 216
           PLP +  C D      NG TC    G      + LP+ K  P    K  V    E +   
Sbjct: 447 PLPNAVCCDDGVHCCPNGYTCDTSSGRCNKGDSVLPLFKKTPAKQLKNVVCPGGEAECPD 506

Query: 217 GDLICVLINAQLV*IVLPDFI 279
           G+  C L + Q     LP+ +
Sbjct: 507 GNTCCKLSSGQYGCCPLPNAV 527



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = +1

Query: 67  PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP 174
           PLP +  C D      NG TC    G  +   + LP+ K  P
Sbjct: 222 PLPNAMCCDDGVHCCPNGYTCDTSSGRCSKGDSVLPLFKKTP 263


>SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)
          Length = 171

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 97  NGLTCPLKEGTLADYKATLPILKSYPKVTVEV 192
           N +   +KEGTL D++ATLP    Y  + VE+
Sbjct: 53  NKMYVAVKEGTLTDFRATLP--SHYLGINVEL 82


>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
          Length = 340

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 97  NGLTCPLKEGTLADYKATLPILKSYPKVTVEV 192
           N +   +KEGTL D++ATLP    Y  + VE+
Sbjct: 53  NKMYVAVKEGTLTDFRATLP--SHYLGINVEL 82


>SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)
          Length = 773

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 133 PGFPP*GGRSARCPCTRQTPA 71
           PGFPP GGR+   P   QTPA
Sbjct: 546 PGFPPDGGRARAIP---QTPA 563


>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
          Length = 630

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 139 NPPGFPP*GGRSARCPCTRQTPAGGT 62
           +P G+PP G   A     +Q P+GGT
Sbjct: 431 HPQGYPPQGDGKAGVTYPQQVPSGGT 456


>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1227

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 6   NIDRINTVSSRGHHEHPDTVP 68
           +++  NT+    HHEH +T+P
Sbjct: 416 HLEHENTIPRTTHHEHENTIP 436


>SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)
          Length = 295

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 49  NIPIPFPLPESDACKDNGLTCPLK-EG-TLADYKATLP 156
           NIP+  PLP  D  +    T PL  EG T ++Y +T P
Sbjct: 76  NIPLSGPLPGEDCVRGERATKPLPGEGETDSNYTSTSP 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,587
Number of Sequences: 59808
Number of extensions: 247729
Number of successful extensions: 456
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)