Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0099
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical ...    28   2.8  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    27   4.9  
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    27   6.4  

>AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical
           protein F56A11.4 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 267 KYYLDQLSVYKNAN*VAMFTLELPLYFHCHLRIRLQDR---QCCFI 139
           KY  D  SV      ++     LP+YFHC+  IR Q R   + CFI
Sbjct: 401 KYLADLSSVLT----ISSTAFRLPVYFHCNGDIRAQIRHFAKACFI 442


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 115 GGRSARCPCTRQTPAGGTVSG 53
           G  +A CPC  +TPAGG   G
Sbjct: 305 GTDAAYCPCPPRTPAGGGGGG 325


>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
           protein C14B9.8 protein.
          Length = 1226

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 189 SKVGAPK*TWRLNL--RSYKRSTGLNSTSRLY*ITGRF*LDFSNLMPAQR 332
           +K+G  K   +LNL  R   R  GL STSRLY I  +F +     M ++R
Sbjct: 487 AKIGESK---KLNLSGRPLDRPIGLLSTSRLYQIGNKFVIFTPQFMDSRR 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,262,179
Number of Sequences: 27780
Number of extensions: 181283
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)