Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0097
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    28   1.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.8  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    27   3.7  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    26   6.4  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   6.4  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    25   8.5  

>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 205 FWINLNSFFLNTICLAFTAFINL 137
           FWIN+NS    T+ +A   F+N+
Sbjct: 189 FWININSGIWITVFIALLCFVNM 211


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 522 PKLAKSVQPYSSFSETNEQQFIF 454
           P+L +S++PY S  + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 601 QFCFSFD-VYPVGRIPLFVLSLFYTKV*VFYLSIEALRSLPG 723
           Q CF+ D V+P G  P+ V S+    + V    I+ LRSL G
Sbjct: 387 QGCFAKDNVFPTGYQPIGVCSVEDCLILVTVSDIQVLRSLTG 428


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 205 FWINLNSFFLNTICLAFTAFINL 137
           +W NLNS    T+ + F  FIN+
Sbjct: 189 YWTNLNSGIWVTVFIVFLFFINI 211


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 181 FLNTICLAFTAFINLSIINVTRNGY 107
           F     L FT F+N S+I + RN Y
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDY 473


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 558 FKPSLDFTNHSRPKLAKSVQPYSSFSETNE 469
           F PS +++++   +L  S  PY+  S  NE
Sbjct: 205 FHPSTEYSDYETAELLDSSLPYAIISSVNE 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,003
Number of Sequences: 5004
Number of extensions: 51996
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)