Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0096
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 97  GPVDRLLFEVKQCYKIFYLKKKFHFIH 17
           G +DRL +E   C + +  +K++ ++H
Sbjct: 708 GALDRLHYETDPCVRYYPRRKEWLYLH 734


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 43  NKKFCNIVSLRITNDRPVP-SC 105
           N + C + SL   ND+P+P SC
Sbjct: 142 NLQCCGVHSLSDYNDKPIPASC 163


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 521 SNFQCPPLRG*SMFTFQLFTTRITCICLLIYYQIML*IKIEKQNLLRKE 375
           S+FQ PP      F+F L+ +      +   Y I L I   ++ L+R++
Sbjct: 216 SSFQGPPFTYRYGFSFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 598 ELRTYAYTNLLSNYSL 551
           ELR  AYT +LSN +L
Sbjct: 756 ELRERAYTKILSNGTL 771


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 598 ELRTYAYTNLLSNYSL 551
           ELR  AYT +LSN +L
Sbjct: 752 ELRERAYTKILSNGTL 767


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 144 LSQFYFSLILFI 179
           + QFYFS ILF+
Sbjct: 1   MRQFYFSAILFL 12


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 129 IILSSLSQFYFSLILFI 179
           II SSLS FY   I+ +
Sbjct: 344 IIYSSLSSFYIPCIIMV 360


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 139 DNIIVWK*KSFGKMGPVDRLLFEVK 65
           +N+  W    F + GP +R+  E+K
Sbjct: 67  NNVNNWLWTPFIERGPANRMYIEIK 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,537
Number of Sequences: 438
Number of extensions: 3664
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)