Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0095
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   1.6  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   3.7  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    24   4.8  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    24   4.8  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    24   6.4  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    23   8.5  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    23   8.5  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 117 INIYCFIEKVLTINWVYIVNHYIDIIXXNSIR 22
           +NI  ++   L +N +Y  N YI +   + IR
Sbjct: 660 LNISSYVNPSLGVNMLYCTNSYISLAKMSEIR 691


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 319 CQEDLSLQEFLEMVRSQNKIN 257
           CQE ++LQE  ++   +N+IN
Sbjct: 488 CQEQITLQEIDDVFMGRNEIN 508


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 146 QWTLSLSAYSYSNKLNTLHQISYKCILLIK 235
           Q+ L ++   Y+N  N   Q +YKC  +++
Sbjct: 501 QFALPINIGGYANASNVQVQTAYKCACMLR 530


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 149 WTLSLSAYSYSNKLNTLHQISYKC 220
           W +SLS+ + S  +N L +++++C
Sbjct: 756 WKVSLSSRAPSEAINCLSKLAFQC 779


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 265 CFASEPSLKTLEGTN 309
           C+ SEPSLK+ E T+
Sbjct: 196 CYTSEPSLKSREPTD 210


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 186 LLE*EYALNDKVHCH*KRKSLVQINIYCFIEKVLTINW 73
           L E E A  +K+    K + +   NI CFI + L  NW
Sbjct: 260 LAELERAEREKMKA--KVEKIKSHNINCFINRQLIYNW 295


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 148 LSLKKKKFSTNKHLLFYRKGFNNKLGIHCEPLHRHNI 38
           L LK    S ++ L+F+RK F N         +R+NI
Sbjct: 315 LFLKDIGLSVDEALVFWRKSFTNVTEDKFNKEYRYNI 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,041,586
Number of Sequences: 5004
Number of extensions: 16354
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)