Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0095
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   0.67 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   2.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   2.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   2.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 154 GPLSLKKKKFSTNKHLLFYRKGFNNKLGIHCEPLHRHNI 38
           GPLSLK K  +T+     +R     + G   + L R+ +
Sbjct: 446 GPLSLKNKVETTHSGTSLFRINLGIECGYEIKKLLRYKL 484


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 80  IVKTFSIKQ*MFICTKLFLF**QWTLSLSAYSYSNKLNTLHQISYKCILL 229
           I+K+ + K   +I  ++FL   Q T  L  Y ++N++  +   SYK + +
Sbjct: 65  IIKSTNEKITRYII-RMFLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 113


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 80  IVKTFSIKQ*MFICTKLFLF**QWTLSLSAYSYSNKLNTLHQISYKCILL 229
           I+K+ + K   +I  ++FL   Q T  L  Y ++N++  +   SYK + +
Sbjct: 48  IIKSTNEKITRYII-RMFLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 96


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 88  NLFYKTINVYLY*TFSFLMT 147
           +L Y+ ++V ++  F FLMT
Sbjct: 52  HLLYQDVHVMIWIGFGFLMT 71


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 20  HLILFXNIMSM*WFTM 67
           +LIL  NI+ + W TM
Sbjct: 81  NLILLQNIIDICWITM 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,252
Number of Sequences: 438
Number of extensions: 1115
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)