Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0093
         (667 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D3Q5 Cluster: Chromosome undetermined scaffold_362, w...    38   0.16 
UniRef50_Q189C7 Cluster: Putative signaling protein; n=1; Clostr...    33   8.2  
UniRef50_A2TRS6 Cluster: Methylmalonyl-CoA mutase; n=1; Dokdonia...    33   8.2  

>UniRef50_A0D3Q5 Cluster: Chromosome undetermined scaffold_362,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_362,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1134

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 18/73 (24%), Positives = 41/73 (56%)
 Frame = +3

Query: 441 QFVVNAAINIFMFFNTLYCENLSLSCHKRSLNCGFLNEQYEYTNQYKIHLTTCQIKSITL 620
           Q+ V + +N + +FN +  + ++L+ + +  +C FL+      N YK ++ + QI  + +
Sbjct: 409 QYYVQSQLN-YQYFNNIGLKEMTLTIYLQKKDCKFLSNDQSLENAYKENIFSLQIARLKI 467

Query: 621 EGEILTDKIIILL 659
           +G  +   +II+L
Sbjct: 468 QG--MNSPVIIIL 478


>UniRef50_Q189C7 Cluster: Putative signaling protein; n=1;
           Clostridium difficile 630|Rep: Putative signaling
           protein - Clostridium difficile (strain 630)
          Length = 409

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 371 VNIYISV*NTSTLYL--YIYDYNIFYNCS*NGPNDQKNKILVYMVSSPDKLVLICLCKHT 198
           +NIY+S+   S  +L  Y+Y YN F        N+ KNK  VY++ S    ++  +C + 
Sbjct: 1   MNIYMSLLVVSLCFLSYYLYHYNFFKYLDIM-INNSKNKYTVYIIYSIFNYLIFIICTYL 59

Query: 197 K 195
           K
Sbjct: 60  K 60


>UniRef50_A2TRS6 Cluster: Methylmalonyl-CoA mutase; n=1; Dokdonia
           donghaensis MED134|Rep: Methylmalonyl-CoA mutase -
           Dokdonia donghaensis MED134
          Length = 451

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 438 VQFVVNAAINIFMFFNTLYCENLSLSCHKRSLNCGFLNEQYEYTNQYKIHLTTCQIKSIT 617
           V F  N   +I   F TL   ++ L      L+  F NE Y Y+++Y++ +    I  + 
Sbjct: 94  VYFQANKPFDIAALFTTLSDTSVPLYFDLSFLDAQFYNELYRYSDKYELVVKLDIINHLA 153

Query: 618 LEGEILTD 641
           L+G   T+
Sbjct: 154 LDGNWFTN 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,350,197
Number of Sequences: 1657284
Number of extensions: 10146017
Number of successful extensions: 23708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23547
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)