Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0093
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    31   0.15 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   7.4  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   9.8  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    25   9.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   9.8  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 474 MFFNTLYCENLSLSCHKRSLNCGFLNEQYEYTNQYKIHLTTC 599
           +F NT+YC    L    R+ +C   +   EY + + I L TC
Sbjct: 177 VFVNTVYCHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNTC 218


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 489 LYCENLSLSCHKRSLNCGFLNEQYEYT 569
           L C + S+SCH R L   F   ++E T
Sbjct: 723 LRCFHCSISCHSRCLKRLFAESEHEKT 749


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 462  INIFMFFNTLYCENLSLSCHKRSLNCGFLNEQYEYTNQYK 581
            + I++FF  L C  +S S    ++ CG  + +Y + +  K
Sbjct: 946  LGIYLFFGFLSCAFISSSSLTMTVLCGIRSGRYLHDSMLK 985


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 498 ENLSLSCHKRSLNCGFLNEQYEYTNQYKIHLTTCQI 605
           E L L+C+   L+  FLNE+ E+       L  C +
Sbjct: 58  EILELACNDAVLDKSFLNERLEHCKLQDFPLVGCLV 93


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 468 IFMFFNTLYCENLSLSCHKR 527
           +F +   L CEN S  CHK+
Sbjct: 433 LFSYSPGLQCENCSFVCHKK 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,489
Number of Sequences: 5004
Number of extensions: 48633
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)