Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0093
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_42206| Best HMM Match : Clat_adaptor_s (HMM E-Value=3.5)            29   3.4  
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   3.4  

>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 260 FYFFGHLDHFNCNYKIYYNHKYTDTEY*YFILKYIYSLYTIFY 388
           +Y++ +  ++   Y  YY+H Y    Y Y+   Y Y  Y  +Y
Sbjct: 113 YYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYY 155



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 260 FYFFGHLDHFNCNYKIYYNHKYTDTEY*YFILKYIYSLYTIFY 388
           +Y++ +  ++   Y  YY H Y    Y Y+   Y Y  Y  +Y
Sbjct: 112 YYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYY 154



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 260 FYFFGHLDHFNCNYKIYYNHKYTDTEY*YFILKYIYSLYTIFY 388
           +Y++ +  ++   Y  YY + Y    Y Y+   Y Y  Y  +Y
Sbjct: 107 YYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYY 149



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 260 FYFFGHLDHFNCNYKIYYNHKYTDTEY*YFILKYIYSLYTIFY 388
           +Y++ +  ++   Y  YY + Y    Y Y+   Y Y  Y  +Y
Sbjct: 108 YYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYY 150



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 260 FYFFGHLDHFNCNYKIYYNHKYTDTEY*YFILKYIYSLYTIFY 388
           +Y++ +  ++   Y  YY + Y    Y Y+   Y Y  Y  +Y
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYY 151



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 260 FYFFGHLDHFNCNYKIYYNHKYTDTEY*YFILKYIYSLYTIFY 388
           +Y++ +  ++  +Y  YY + Y    Y Y+   Y Y  Y  +Y
Sbjct: 120 YYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 162



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 260 FYFFGHLDHFNCNYKIYYNHKYTDTEY*YFILKYIYSLYTIFY 388
           +Y++ +  +++  Y  YY + Y    Y Y+   Y Y  Y  +Y
Sbjct: 121 YYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 163


>SB_42206| Best HMM Match : Clat_adaptor_s (HMM E-Value=3.5)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 564 YTNQYKIHLTTCQIKSITLEGEILTDKIIILLN 662
           + N+ + H+ TC  K  TLE E+L D+I+  +N
Sbjct: 112 FVNRLRDHIATC--KYTTLENEMLRDRIVFGVN 142


>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1250

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 471 FMFFNTLYCENLSLSCHKRSL 533
           +++FN   CE   L+CHKR L
Sbjct: 194 YVYFNGAECEQCGLTCHKRCL 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,427
Number of Sequences: 59808
Number of extensions: 322891
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)