Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0092
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    28   1.5  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   2.6  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   4.5  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   4.5  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   7.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 32  FKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATLHL 211
           F+N+PG+  +NV   NL  + P                     L D +F   TE+A   L
Sbjct: 221 FRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIW-----TKSAFGLLDSVFGSTTEVA--QL 273

Query: 212 LKN---PIDTVYGLQISDLLTLNAGQTNIKFVGPS 307
            KN   P + +    ++ L+  +  Q+ +K  GPS
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPS 308


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = +2

Query: 32  FKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPDDIFSENTELATLHL 211
           F+N+PG+  +NV   NL  + P                     L D +F   TE A   L
Sbjct: 221 FRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIW-----TKSAFGLLDSVFGSTTEAA--QL 273

Query: 212 LKN---PIDTVYGLQISDLLTLNAGQTNIKFVGPS 307
            KN   P + +    ++ L+  +  Q+ +K  GPS
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPS 308


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 20  TANTFKNMPGLMYLNVAGNNLSDMD 94
           TA TF+N P L    + GN L ++D
Sbjct: 142 TACTFQNYPDLNTCEICGNQLKNVD 166


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = +2

Query: 2   CNMQYITANTFKNMPGLMYLNVAGNNLSDMDPDTFXXXXXXXXXXXRNNHIKSLPDDIFS 181
           C ++ I  N F ++  L+ L+++GN L+++ P               +N I         
Sbjct: 342 CKLKSIPKNVFLSLQSLVSLDLSGNELTEI-PYALGELPQLCSLNLASNKITGCRTFYHI 400

Query: 182 ENTELATLHLLKNPIDTVYGLQ 247
             + L  L L +N + ++ GL+
Sbjct: 401 SLSHLQILVLSRNHLTSLSGLE 422


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 476 DIFKISNNPRLKHLPVEGFTC 538
           DI+ ++ N R  H+  EGF C
Sbjct: 584 DIYVVTENHRWLHIVCEGFNC 604


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 269 NAGQTNIKFVGPSMFNGMGLIANL 340
           N  + N+  +GPS+FN +G ++++
Sbjct: 163 NGSELNVGVLGPSLFNPIGNLSDI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,317
Number of Sequences: 5004
Number of extensions: 46046
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)