Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0088
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 28 1.6
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 2.1
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.8
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 3.7
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 27 3.7
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 4.9
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 4.9
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 4.9
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 26 6.5
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr... 25 8.6
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 8.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.6
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 201 FDLFFRTNPFQGEFTIFAGLEECMKFLEN 287
FDLF NP F+IF L C + +
Sbjct: 608 FDLFLEKNPIPQLFSIFTSLNHCKSLISS 636
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.9 bits (59), Expect = 1.6
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = +3
Query: 90 KQMARQNGI-VQPLL----TDLYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQGEFTIFA 254
KQ+A QN + PL+ +DLY + ++S + + ++L + T G I
Sbjct: 925 KQVAEQNALEALPLVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYST--CLGPVKIVN 982
Query: 255 GLEECMKFLENFHYSNSDIKYLKQTLPENIEPEFYLYLKELTCKDIIVSAIEE 413
G + + F+ FH SN +I L + I P Y Y+KE K ++ +EE
Sbjct: 983 GKVK-LGFM--FHSSNPNIVNLIKN-DVYISPNGYAYVKENVRKSLLAKMLEE 1031
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 541 DIGWWPVKMYPYSNSDYGERKDPMEGFRRPNMRTSVGFDGTSNV 672
+I W ++MYP S E D + GF +PN +GF + +
Sbjct: 887 NIAWPDLEMYPCSE----EALDLINGFLQPNPERRLGFSDINEI 926
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/45 (26%), Positives = 17/45 (37%)
Frame = +2
Query: 593 ESARTRWRAFGVQICVHRWVLTGPATFWREKMFNIPVKGTHAHSF 727
+SA W IC L +WR + +P+ T H F
Sbjct: 966 DSANYNWNYVDQLICGFETYLPDSVKYWRARFVLLPMSTTSTHVF 1010
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 664 WSRQNPPMYAYLDAESPPSGPCALRSPNSSRDTFLPATIRYLAA 533
WS N YAY A + +G + + + DT++P +R++ A
Sbjct: 521 WSNTNYDTYAYWHATNGQTGIASFSMGSLTADTYVP--VRFVVA 562
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +1
Query: 61 KCRVKYLLQINRWLDKTV--LCNHF 129
KC+ + + + RW+D+ + LC HF
Sbjct: 532 KCQTEDEMSVTRWIDRNLIRLCQHF 556
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 263 GVYEIFRKLSLF*QRYQIFEANI 331
G+Y++ +LS+ Q QIFE NI
Sbjct: 1295 GLYDLRSRLSIIPQESQIFEGNI 1317
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 241 NSPWNGFVRKNKSNTATS 188
NS W GF++K SN TS
Sbjct: 3 NSKWGGFLKKAMSNVETS 20
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 523 WPRTLRDIGWWPVKMYPYSNSDYGERKDPMEGFRRPNMRTSVGFDGTSN 669
W T RD+ + +DY +K+P+ G P+ GF G N
Sbjct: 274 WVSTTRDLKADIKSFLSMATTDYQLQKNPLHGSSEPSSPGPTGFLGGIN 322
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 114 IVQPLLTDLYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQG-EFTIFAGLEECMKFLENF 290
+V L TDLY++TM A + D V + +P + L E ++ L N
Sbjct: 6 VVSILDTDLYKLTMLQAVLE--HYPDAQVSYKYTNRSPKMALNQEAYNWLREQIRGLRNL 63
Query: 291 HYSNSDIKYLKQTLPENIEPEFYLYLKE 374
H + ++L++ P ++ FY ++ E
Sbjct: 64 HLLPEEEQWLRKNCP-YLKESFYEFMHE 90
>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 458
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 416 SFFNSTYNNVLAS*FFEI*IKFRFNVFR*CLLQIFDIAVR 297
S FN+ + L + FF+I FR + CLL +F ++R
Sbjct: 302 SSFNTEATSNLYTRFFKIASSFRVSYLMGCLLDLFVPSIR 341
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 165 YWKSGKVNDVAVFDLFFRTNPFQGEFTIFAGLEECMKF-LENFHYSNSDIKY 317
YW + ++D F NP +G I LE+ + F + S SD++Y
Sbjct: 278 YWYRALSVTLLLYDNFVNRNPSRGIKGIQTLLEKILDFCISPLQSSESDVEY 329
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 367 RYK*NSGSMFSGNVCFKYLISLLE**KFSKNFIHSS 260
RYK + S S V F++ ISL + FS NFI S+
Sbjct: 3714 RYKLSIKSFLSVVVVFQHFISLKKSYSFSFNFIWST 3749
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,213
Number of Sequences: 5004
Number of extensions: 70442
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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