Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0088
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0967 + 21318974-21319140,21321677-21321821,21322045-213221... 241 5e-64
03_06_0598 + 34977063-34977220,34977957-34978101,34978362-349784... 218 3e-57
05_05_0107 + 22442118-22443437,22443775-22443873 31 1.3
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 29 5.1
05_04_0043 + 17450999-17451181,17451353-17451416,17451642-174517... 28 9.0
04_01_0392 + 5149981-5150014,5150124-5150188,5150572-5150868 28 9.0
>04_03_0967 +
21318974-21319140,21321677-21321821,21322045-21322164,
21322261-21322395,21322503-21322564,21322804-21322879,
21323555-21323656,21323732-21323848,21324403-21324461,
21324927-21325101,21325233-21325367,21325429-21325545,
21325686-21325794,21325939-21326051,21326561-21326615,
21326657-21326769
Length = 599
Score = 241 bits (589), Expect = 5e-64
Identities = 113/185 (61%), Positives = 142/185 (76%)
Frame = +3
Query: 99 ARQNGIVQPLLTDLYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQGEFTIFAGLEECMKF 278
A N + LLTD YQ +MAYAYWK+GK D AVFDL+FR NPF GEFT+FAGLEEC+KF
Sbjct: 23 APTNPMATALLTDQYQFSMAYAYWKAGKHADRAVFDLYFRKNPFGGEFTVFAGLEECIKF 82
Query: 279 LENFHYSNSDIKYLKQTLPENIEPEFYLYLKELTCKDIIVSAIEEGSVVFPRVPLLRVEG 458
+ NF ++ DI +L+ +P E F+ YL++ C D+ V +I EGSVVFP+VPL+RVEG
Sbjct: 83 IANFKFTEDDILFLQSVMPM-CEDAFFDYLRKTDCSDVEVYSIPEGSVVFPKVPLMRVEG 141
Query: 459 PLIVAQLLETTLLTLVNFASLMATNAARYRMVAGKNVSLLEFGLRRAQGPDGGLSASKYA 638
P+ V QLLET + L+N+ASL+ TNAAR+R VAGK+ LLEFGLRRAQGPDG +SASKY
Sbjct: 142 PVAVVQLLETPFVNLINYASLVTTNAARHRHVAGKSKVLLEFGLRRAQGPDGAISASKYC 201
Query: 639 YIGGF 653
++GGF
Sbjct: 202 FMGGF 206
Score = 30.7 bits (66), Expect = 1.3
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +2
Query: 686 MFNIPVKGTHAHSFVTSF 739
+F IP++GTH+H++V+S+
Sbjct: 217 LFGIPLRGTHSHAYVSSY 234
>03_06_0598 +
34977063-34977220,34977957-34978101,34978362-34978481,
34978640-34978774,34979138-34979213,34979398-34979450,
34979594-34979695,34979848-34979964,34980170-34980228,
34980810-34980984,34981628-34981762,34981855-34981953,
34982143-34982251,34982981-34983093,34983206-34983265,
34983821-34983835
Length = 556
Score = 218 bits (533), Expect = 3e-57
Identities = 103/165 (62%), Positives = 130/165 (78%)
Frame = +3
Query: 108 NGIVQPLLTDLYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQGEFTIFAGLEECMKFLEN 287
N +V PLLTDLYQ TMAYAYWK+GK D AVFDL+FR NPF GEFTIF GLEEC++F+ N
Sbjct: 23 NPMVTPLLTDLYQFTMAYAYWKAGKHLDRAVFDLYFRKNPFGGEFTIFGGLEECIRFIAN 82
Query: 288 FHYSNSDIKYLKQTLPENIEPEFYLYLKELTCKDIIVSAIEEGSVVFPRVPLLRVEGPLI 467
F ++++I +L+ +P E F+ YL + C D+ V AI EGSVVFP+VPL+ +EGP+
Sbjct: 83 FKLTDTEITFLRSAMP-TCEDGFFEYLSSIDCSDVEVYAIPEGSVVFPKVPLMIIEGPVA 141
Query: 468 VAQLLETTLLTLVNFASLMATNAARYRMVAGKNVSLLEFGLRRAQ 602
V QLLET L+LVN+ASL+ TNAAR+R+VAGK+ +LLEFGLRRAQ
Sbjct: 142 VIQLLETPFLSLVNYASLVTTNAARHRLVAGKSKNLLEFGLRRAQ 186
>05_05_0107 + 22442118-22443437,22443775-22443873
Length = 472
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/45 (46%), Positives = 22/45 (48%)
Frame = -2
Query: 646 PMYAYLDAESPPSGPCALRSPNSSRDTFLPATIRYLAAFVAIKLA 512
P A L AESP S P L SP + RDT A AA VA A
Sbjct: 371 PPPAALPAESPESAPTKLSSPPALRDTAGNANHTAAAAAVAAAAA 415
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 556 PVKMYPYSNSDYGERKDPMEGFRRPNMRTSVGFDGTSNVLAGKDVQYTGKGHP 714
P Y S YG ++D R N G+ GTS + QY G +P
Sbjct: 217 PQGNYQNSPPPYGSQQDGRGYAPRQNYADRPGYSGTSGGYQSQTTQYQGHANP 269
>05_04_0043 +
17450999-17451181,17451353-17451416,17451642-17451700,
17452331-17452406,17452469-17452597,17453524-17453611,
17453711-17453966,17454308-17454423,17454569-17454789,
17454977-17455005,17455167-17455273,17455778-17456015
Length = 521
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 138 LYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQGEFTIFAG 257
L + +A A W+SG+ A L F F GEF AG
Sbjct: 17 LLLLLLAAAPWRSGEAAAAAARALNFTRQDFPGEFVFGAG 56
>04_01_0392 + 5149981-5150014,5150124-5150188,5150572-5150868
Length = 131
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 261 EECMKFLENFHYSNSD---IKYLKQTLPENIEP 350
EEC+K L+N HY+ SD + + LPE +P
Sbjct: 41 EECIKILKNCHYALSDNGKVIVVDIVLPETPKP 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,186,020
Number of Sequences: 37544
Number of extensions: 438554
Number of successful extensions: 1126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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