Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0088
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23420.1 68415.m02796 nicotinate phosphoribosyltransferase fa... 253 8e-68
At4g36940.1 68417.m05236 nicotinate phosphoribosyltransferase fa... 252 2e-67
At5g38730.1 68418.m04684 pentatricopeptide (PPR) repeat-containi... 33 0.15
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 30 1.9
At5g05160.1 68418.m00549 leucine-rich repeat transmembrane prote... 28 7.5
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 7.5
At5g66370.1 68418.m08368 hypothetical protein similar to unknown... 27 9.9
At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ... 27 9.9
At1g26250.1 68414.m03202 proline-rich extensin, putative similar... 27 9.9
>At2g23420.1 68415.m02796 nicotinate phosphoribosyltransferase
family protein / NAPRTase family protein contains Pfam
domain PF04095: Nicotinate phosphoribosyltransferase
(NAPRTase)
Length = 557
Score = 253 bits (620), Expect = 8e-68
Identities = 122/192 (63%), Positives = 149/192 (77%)
Frame = +3
Query: 108 NGIVQPLLTDLYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQGEFTIFAGLEECMKFLEN 287
N +V PLL DLYQ TMAYAYWK+GK N+ +VFDL+FR NPF GE+T+FAGLEEC+KFL N
Sbjct: 20 NPMVTPLLNDLYQFTMAYAYWKAGKHNERSVFDLYFRKNPFGGEYTVFAGLEECVKFLAN 79
Query: 288 FHYSNSDIKYLKQTLPENIEPEFYLYLKELTCKDIIVSAIEEGSVVFPRVPLLRVEGPLI 467
F ++ +I ++++ LP + E F YL+ L C D+ V AI EGSVVFP+VPL+RVEGP+
Sbjct: 80 FKLTDEEIDFVQECLPGS-EEAFCDYLRGLDCSDVEVYAIPEGSVVFPKVPLMRVEGPVG 138
Query: 468 VAQLLETTLLTLVNFASLMATNAARYRMVAGKNVSLLEFGLRRAQGPDGGLSASKYAYIG 647
V QLLET L LVNFASL+ATNAAR+R VAGK+ SLLEFG RRAQGPDG +SASKY Y+G
Sbjct: 139 VVQLLETPFLNLVNFASLVATNAARHRFVAGKSKSLLEFGARRAQGPDGAISASKYCYLG 198
Query: 648 GF*RDQQRSGGK 683
GF + GK
Sbjct: 199 GFDATSNVAAGK 210
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/19 (57%), Positives = 18/19 (94%)
Frame = +2
Query: 683 KMFNIPVKGTHAHSFVTSF 739
K+F IP++GTH+H++V+SF
Sbjct: 210 KLFGIPLRGTHSHAYVSSF 228
>At4g36940.1 68417.m05236 nicotinate phosphoribosyltransferase
family protein / NAPRTase family protein contains Pfam
domain PF04095: Nicotinate phosphoribosyltransferase
(NAPRTase)
Length = 458
Score = 252 bits (617), Expect = 2e-67
Identities = 120/192 (62%), Positives = 148/192 (77%)
Frame = +3
Query: 108 NGIVQPLLTDLYQITMAYAYWKSGKVNDVAVFDLFFRTNPFQGEFTIFAGLEECMKFLEN 287
N +V PLL DLYQ TMAYAYWK+GK ++ +VFDL+FR NPF GE+TIFAGLEEC+KFL N
Sbjct: 22 NPMVTPLLNDLYQFTMAYAYWKAGKQSERSVFDLYFRKNPFGGEYTIFAGLEECIKFLAN 81
Query: 288 FHYSNSDIKYLKQTLPENIEPEFYLYLKELTCKDIIVSAIEEGSVVFPRVPLLRVEGPLI 467
F+ ++ +I +++ +LP E F YL+ L C DI V AI EGSVVFP+VPLLR+EGP+
Sbjct: 82 FNLTDEEINFVRDSLP-GCEEAFCDYLRGLDCSDIEVYAISEGSVVFPKVPLLRIEGPVA 140
Query: 468 VAQLLETTLLTLVNFASLMATNAARYRMVAGKNVSLLEFGLRRAQGPDGGLSASKYAYIG 647
V QLLET L L+N+ASL+ATNAAR+R VAGK+ LLEFG RRAQGPDG +SASKY Y+G
Sbjct: 141 VVQLLETPFLNLINYASLVATNAARHRFVAGKSKLLLEFGARRAQGPDGAISASKYCYLG 200
Query: 648 GF*RDQQRSGGK 683
GF + GK
Sbjct: 201 GFDATSNVAAGK 212
Score = 35.1 bits (77), Expect = 0.049
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +2
Query: 683 KMFNIPVKGTHAHSFVTSF 739
K+F IP++GTH+H+FV+SF
Sbjct: 212 KLFGIPLRGTHSHAFVSSF 230
>At5g38730.1 68418.m04684 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 596
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/23 (56%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +3
Query: 150 TMAYAYWKSGKVNDV-AVFDLFF 215
TMAYAYW++GKV + A+FD+ +
Sbjct: 522 TMAYAYWRTGKVTEASALFDVMY 544
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 261 EECMKFLENFHYSNSD 308
EEC+KF++N H+S SD
Sbjct: 577 EECLKFVKNVHFSESD 592
>At5g05160.1 68418.m00549 leucine-rich repeat transmembrane protein
kinase, putative
Length = 640
Score = 27.9 bits (59), Expect = 7.5
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Frame = +3
Query: 3 ILNSSDVLVSVKLNYFV*EKMSSEISIADKQMARQNGIVQPLLTDLY---QITMAYAYWK 173
+L + +V +L V K E + Q+ PLL Y + + Y Y
Sbjct: 365 VLEDTTAVVVKRLREVVASKKEFEQQMEIVGKINQHSNFVPLLAYYYSKDEKLLVYKYMT 424
Query: 174 SGKVNDVAVFDLFFRTNPFQGEFTIFAGLEECMKFLENFHYSNSDIKYLKQTLPENIEP 350
G + + + R ++ I G + + +L + + + DIK L E++EP
Sbjct: 425 KGSLFGIMHGNRGDRGVDWETRMKIATGTSKAISYLHSLKFVHGDIKSSNILLTEDLEP 483
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 664 WSRQNPPMYAYLDAESPPSGPCALRS 587
W + PP YA+LD E P A+R+
Sbjct: 32 WVARRPPGYAFLDFEDPRDARDAIRA 57
>At5g66370.1 68418.m08368 hypothetical protein similar to unknown
protein (emb CAB62624.1)
Length = 150
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 682 FPPERCWSRQNPPMYAYLDAESP 614
+P + C+SRQ+PP Y+ A P
Sbjct: 114 WPSDNCYSRQHPPYYSQSLAMQP 136
>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 324
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 523 WPRTLRDIGWWPVKMYPYSNSDYGERKDPMEGFRRPNMRTSVGFDGT-SNVLAGKDVQYT 699
+PR + + P K P+ Y + P++ RP + F+ T S+ +GKD++Y
Sbjct: 181 FPRNVDKFSFSP-KQNPHQYVSY---RQPLKRHCRPTKK----FENTFSDFDSGKDIEYD 232
Query: 700 GKGHPRAFVRY 732
G+ H + +Y
Sbjct: 233 GRTHSLPYEKY 243
>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
extensin gi|1165322|gb|AAB53156; contains proline-rich
extensin domains, INTERPRO:IPR002965
Length = 443
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 679 PPERCWSRQNPPMYAYLDAESPPSGPCALRSP 584
PP + ++PP Y+D+ SPP P + P
Sbjct: 330 PPPPPYVYKSPPPPPYVDSYSPPPAPYVYKPP 361
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,498,179
Number of Sequences: 28952
Number of extensions: 362012
Number of successful extensions: 978
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -