Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0083
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)                    28   5.7  
SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.5  
SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10)         28   7.5  

>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 168  SDEWSIFSVAAGCSSCRCDL 227
            S+ W + S  AGCS+C CD+
Sbjct: 1503 SEYWGLSSTPAGCSNCACDV 1522


>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 895

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 118 F*LNRNSQYNNFIMQSTFKSEVLFRKL 38
           F   RN++Y N++++  +K E++F KL
Sbjct: 32  FLCRRNNEYKNYLIKQGYKPELVFSKL 58


>SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)
          Length = 334

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = -3

Query: 345 IIK*FLRKSHNNSHALGSSAMIFIVTRKKCKIVQNWTDNSSHNGKMSIQQQH*ICSTRLI 166
           ++K  +  S + + A+G +    I++    K   +W +N++H  + S Q     C  +  
Sbjct: 125 VLKDDVTLSRSETSAMGRAPRSNILSHMAAKNKTSWVENAAHKREQSSQSNSIQCKGK-N 183

Query: 165 PSSKTHREQLRFVALNS 115
           P SKT  E+ + +A+N+
Sbjct: 184 PYSKTPYEKSQ-LAINA 199


>SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 907

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 102 TLSITTS*C-SLRSNRKSCFVNSLVTSLNSGV 10
           +LSI T  C SLRS RK C + SLV +L   +
Sbjct: 70  SLSILTVNCRSLRSERKRCELQSLVDTLKPDI 101


>SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10)
          Length = 805

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 102 TLSITTS*C-SLRSNRKSCFVNSLVTSLNSGV 10
           +LSI T  C SLRS RK C + SLV +L   +
Sbjct: 70  SLSILTVNCRSLRSERKRCELQSLVDTLKPDI 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,833,950
Number of Sequences: 59808
Number of extensions: 343428
Number of successful extensions: 3003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)