Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0082
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   2.0  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   4.6  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -1

Query: 283 W*QYRTNDRNINNVYGVNTATFRSFQRWHQNNFSEIASNWQGKIKIKVGIAQNERS 116
           W  Y    +N+N++ G      R+F+  + +N  EI   W   ++I+    +NER+
Sbjct: 581 WLLYAKERKNVNDIAGARNILGRAFE--YNSNSEEI---WLAAVRIEFVNNENERA 631


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +2

Query: 191 VLMPTLKASEGCSVHTVHIIYV-AIVCAVLLPRRC-SYSIITNKQLVEFEHTIPYF*CKF 364
           VL PTL   E   +   +   + A+  A+ LP    S +I+  K+       + Y     
Sbjct: 56  VLPPTLTVEEELELVNYYSFQLNALSSALSLPTHIRSTAILFFKRFYLINSVMEYSPKII 115

Query: 365 NFKSEFIASRMYINYVSND*YCK 433
           +F S F+A++   +Y+S + +CK
Sbjct: 116 SFTSLFLATKCNDHYISIEQFCK 138


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/95 (20%), Positives = 40/95 (42%)
 Frame = -1

Query: 565 MFRTITTTIHYGILQVVHTYH*KYFYGLIMRLFYIIGLYL*SFRFTILVI*NVIYIHTAG 386
           +F +I  T+   +L  ++ Y      GLI+ LFY+  L   +F F      + +      
Sbjct: 394 IFVSIFDTLTVLLLTWINPYVINSHTGLILALFYLTNLIALAFSFRAAATHSKLSSEDLS 453

Query: 385 NXXXXXXXFALKIWNCMFKFN*LFISYYGIRASSW 281
           +       +A  +W  +F  + +   Y+ + ++ W
Sbjct: 454 SIEIVFIWYAQILWYLVFIVSVILSIYFQLGSTYW 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,004
Number of Sequences: 5004
Number of extensions: 52592
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)