Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0078
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   3.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 134 FRTKIL*ILKDKNQPGSHRVELKSWK 211
           FR  ++  + DK+ PG   ++ +SW+
Sbjct: 123 FRDHLINQIPDKSFPGVGVIDFESWR 148


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 59  N*NNY*FK*NLIKFNPTQYNGN 124
           N NNY +  N   +N   YN N
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNN 346


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 246 FTLKFYFNPTW 278
           FTL FYF   W
Sbjct: 57  FTLDFYFRQFW 67


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 246 FTLKFYFNPTW 278
           FTL FYF   W
Sbjct: 57  FTLDFYFRQFW 67


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 187 PGGTQIMENFKGRTDQ 234
           P GT I+EN +  +DQ
Sbjct: 541 PNGTLIIENVERMSDQ 556


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 497 KFYNLFCKNFYF*IFKILNYFV 432
           K    F KNF    F ++NYF+
Sbjct: 2   KIQKYFGKNFPSTSFILINYFI 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,517
Number of Sequences: 438
Number of extensions: 1659
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)