Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0075
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    30   0.38 
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.5  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   4.7  

>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 23/69 (33%), Positives = 30/69 (43%)
 Frame = -1

Query: 279 SPFASIGSLGVVESSSPNLSPTATVVVLLGVSGNPIGLDPAKEGR*HSTSVDEVSNITTA 100
           SPFAS GS     +SSPN   T+T       + NP  L  +     H+TS    SN   +
Sbjct: 215 SPFAS-GSFSPFATSSPNFLSTSTPAPPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQS 273

Query: 99  NTFEIIVSP 73
           + F     P
Sbjct: 274 SLFSPTARP 282


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 423 PVKTLLPPKQTQTQCRQYRAAGHRTPHRPV 512
           P   +  PK+ Q  C  Y    +RTP  PV
Sbjct: 63  PPIAISDPKEAQNHCSSYYYIKYRTPDSPV 92


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 566 VTNVKPTSTVANKPGAESTVTAEPYSLQWFVNHY 667
           +T++K     A K GA+  +T E   +QW  N Y
Sbjct: 150 MTDIKDVVEHAAKLGAQRLITLEELPVQWHNNPY 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,647
Number of Sequences: 5004
Number of extensions: 51766
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)